Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq162 143 2e-29 seq3 84.2 2e-11 >seq162 Length=246154 Score = 143 bits (158), Expect = 2e-29 Identities = 439/676 (65%), Gaps = 18/676 (3%) Strand=Plus/Minus Query 29569 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29628 ||| || || | | |||| ||| | | || || |||| | ||||| |||| |||| Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208 Query 29629 CCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688 | || ||||| | | || || || || |||| ||| || || |||| || |||| Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 29689 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 |||||||||||| || |||| ||| |||||| | || || || ||||||| ||||| | Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | | ||| ||||||||| |||||||| || || |||||||| | || ||| || | Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029 Query 29808 GCTGGCACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGCA-TGGCA 29859 ||||||| ||||||||||| ||| ||||| || || || |||| ||||| Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTG-TGCAAGGCAGTGGCA 67971 Query 29860 CGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCT 29919 || || | ||||| | ||| ||| |||||||| ||| |||||||| | Sbjct 67970 GGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACG 67911 Query 29920 GTCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATC 29977 || ||| || | |||||| ||||| | | | ||| ||| || | ||| | Sbjct 67910 ATCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTG 67853 Query 29978 CCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCG 30037 || |||||| | || || | |||||| || || Sbjct 67852 CCGCTGTAGTCATCGTCGCAGGTGCCATACTCGGCACCAAAGTGTCGCCACTGAAAGCCA 67793 Query 30038 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30097 || || || ||||| |||||| | | | || | | |||| |||||| | ||| ||| Sbjct 67792 TAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTCT 67733 Query 30098 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCGGAGAGCTCTTTGGAGTTTGT 30156 |||| | |||| | ||||| || | || |||| | | || ||| | | | ||| Sbjct 67732 CTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTGT 67674 Query 30157 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGT 30216 || || ||||| ||||||||||||||||| ||| | || |||| |||||| Sbjct 67673 CTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGT 67614 Query 30217 CGTGAGGAGGGGAAAC 30232 || || ||||||||| Sbjct 67613 GGTCAGCAGGGGAAAC 67598 >seq3 Length=3134003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 10/151 (7%) Strand=Plus/Plus Query 53525 CCAGAGATGGGCGACAAGTTTGCATC-CTTCACGGCGCAAAAGGGGACATGCGGAGCGGT 53583 ||| |||| |||||||||||||| || | |||||| ||| ||||| || ||||| | Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806 Query 53584 CCTGACT---CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 53639 || | | |||||||| ||||||||| ||| | || || ||| ||||| |||||| Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 |||| ||||| ||| | ||||| | ||||| Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153621529410