Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq162 143 2e-29
seq3 84.2 2e-11
>seq162
Length=246154
Score = 143 bits (158), Expect = 2e-29
Identities = 439/676 (65%), Gaps = 18/676 (3%)
Strand=Plus/Minus
Query 29569 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29628
||| || || | | |||| ||| | | || || |||| | ||||| |||| ||||
Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208
Query 29629 CCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAG 29688
| || ||||| | | || || || || |||| ||| || || |||| || ||||
Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148
Query 29689 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747
|||||||||||| || |||| ||| |||||| | || || || ||||||| ||||| |
Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089
Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807
| | ||| ||||||||| |||||||| || || |||||||| | || ||| || |
Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029
Query 29808 GCTGGCACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGCA-TGGCA 29859
||||||| ||||||||||| ||| ||||| || || || |||| |||||
Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTG-TGCAAGGCAGTGGCA 67971
Query 29860 CGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCT 29919
|| || | ||||| | ||| ||| |||||||| ||| |||||||| |
Sbjct 67970 GGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACG 67911
Query 29920 GTCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATC 29977
|| ||| || | |||||| ||||| | | | ||| ||| || | ||| |
Sbjct 67910 ATCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTG 67853
Query 29978 CCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCG 30037
|| |||||| | || || | |||||| || ||
Sbjct 67852 CCGCTGTAGTCATCGTCGCAGGTGCCATACTCGGCACCAAAGTGTCGCCACTGAAAGCCA 67793
Query 30038 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30097
|| || || ||||| |||||| | | | || | | |||| |||||| | ||| |||
Sbjct 67792 TAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTCT 67733
Query 30098 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCGGAGAGCTCTTTGGAGTTTGT 30156
|||| | |||| | ||||| || | || |||| | | || ||| | | | |||
Sbjct 67732 CTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTGT 67674
Query 30157 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGT 30216
|| || ||||| ||||||||||||||||| ||| | || |||| ||||||
Sbjct 67673 CTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGT 67614
Query 30217 CGTGAGGAGGGGAAAC 30232
|| || |||||||||
Sbjct 67613 GGTCAGCAGGGGAAAC 67598
>seq3
Length=3134003
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/151 (75%), Gaps = 10/151 (7%)
Strand=Plus/Plus
Query 53525 CCAGAGATGGGCGACAAGTTTGCATC-CTTCACGGCGCAAAAGGGGACATGCGGAGCGGT 53583
||| |||| |||||||||||||| || | |||||| ||| ||||| || ||||| |
Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806
Query 53584 CCTGACT---CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 53639
|| | | |||||||| ||||||||| ||| | || || ||| ||||| ||||||
Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865
Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670
|||| ||||| ||| | ||||| | |||||
Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406153621529410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |