Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq162 172 4e-38 >seq162 Length=246154 Score = 172 bits (190), Expect = 4e-38 Identities = 450/676 (67%), Gaps = 18/676 (3%) Strand=Plus/Minus Query 27063 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 27122 ||| || || | | |||| ||| | | || || |||| | ||||| |||| |||| Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208 Query 27123 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 27182 | || ||||| ||| || || || || || | || || || |||| ||| |||| Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 27183 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 27241 |||||||||||| || |||| ||| |||||| | || || || ||||||| ||||| | Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089 Query 27242 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA 27301 | | ||| ||||||||| ||||| || || || |||||||| | || ||| || | Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029 Query 27302 GCTGACACGAGAGCTCTCCATCGCTT-------ACGTAAAACTGACATATGGCGTGGCAC 27354 |||| || ||||||||||| ||| | ||||| || || | | |||||| Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTGTGCAAGGCAGTGGCAG 67970 Query 27355 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 27414 || || | ||||| | ||| ||| ||||||||| ||| |||||||| | Sbjct 67969 GGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACGA 67910 Query 27415 TCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATCC 27472 || ||| || | |||||| ||||| | | | ||| ||| || | ||| | | Sbjct 67909 TCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTGC 67852 Query 27473 CCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCG 27531 | |||||| | | || || | ||||| || || || || | ||| || || || Sbjct 67851 CGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAAGTGTCGCCACTGAAAGCCA 67793 Query 27532 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 27591 || || || ||||| |||||| | | | || | | |||| |||||| | ||| ||| Sbjct 67792 TAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTCT 67733 Query 27592 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCGGAGAGCTCTTTGGAGTTTGT 27650 |||| | |||| | ||||| || | || |||| | | || ||| | | | ||| Sbjct 67732 CTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTGT 67674 Query 27651 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGT 27710 || || ||||| ||||||||||||||||| ||| | || |||| |||||| Sbjct 67673 CTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGT 67614 Query 27711 CGTGAGGAGGGGAAAC 27726 || || ||||||||| Sbjct 67613 GGTCAGCAGGGGAAAC 67598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498485980985