Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq328 724 0.0
>seq328
Length=165906
Score = 724 bits (802), Expect = 0.0
Identities = 1309/1892 (69%), Gaps = 44/1892 (2%)
Strand=Plus/Minus
Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829
|| || || | |||||| || |||| | | || |||||||| |||| ||| |||||
Sbjct 107411 TTTTTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATT 107352
Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889
|| |||||||| || |||| | | ||||| ||| ||||| ||| || ||
Sbjct 107351 CCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTA 107292
Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949
|| ||||| | ||||| ||| | ||||||||||||||| || || || |||||||||||
Sbjct 107291 GGCTCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCA 107232
Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009
||||| || || ||| || | ||||||||| | ||||| ||| | | | |
Sbjct 107231 GCCATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAA---GATCGCGA 107175
Query 77010 TCATCT---GGAAG-GTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATTC 77063
||| | |||| |||| ||||||||||||| || | | ||| || ||| ||||
Sbjct 107174 ACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTT 107115
Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123
|| |||||||||| ||| || | | |||||||||| | || | | |||| |||| ||
Sbjct 107114 TTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACC 107055
Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183
| ||||||||| ||||| ||||||| | || || |||||| | ||||||||||| |
Sbjct 107054 ACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAAT 106995
Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243
||||| || || |||| |||||| |||||||| || || |||||||| || || || ||
Sbjct 106994 GATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAAC 106935
Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA-AAGATC 77302
||| || | || ||| || | || | ||||| || | || ||||||||| ||| ||
Sbjct 106934 GAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTC 106875
Query 77303 --TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360
|| || | | ||||| | ||| ||||||||||| || || || || |||
Sbjct 106874 GTTGGAGTTTTA---TCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCT 106818
Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420
||||| ||||| || || || | ||| || ||||||||||| ||||| || || ||
Sbjct 106817 TTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCA 106758
Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480
||||||| ||||| || || | | || | | ||||| ||| ||| | |||
Sbjct 106757 AAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGA 106698
Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540
|| | | ||||| || || || || || || ||||| || |||||||| || | |||
Sbjct 106697 AAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGC 106638
Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600
|| |||||| | ||||||||||| | || ||||| || |||||||| ||||||||
Sbjct 106637 CTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTA 106578
Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660
|||||| || |||| ||| || || |||| ||| ||||||||| || |||
Sbjct 106577 AGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCT 106518
Query 77661 A---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717
| ||||||||||| | || || || |||| ||| ||||| || | ||||| || |
Sbjct 106517 GGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAG-G 106459
Query 77718 TTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774
| ||| || | | || || ||||||| |||||| ||||| |||||||| | ||||
Sbjct 106458 T--GCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTT 106401
Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834
||||| ||||||||| |||| || || |||||| |||| || | || | || ||||||
Sbjct 106400 TGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCA 106341
Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TCATAGATTTGTATC 77892
| || ||||| ||||| | ||| | ||||| |||||| | | | |||| | | |
Sbjct 106340 ACTTGCGATTCTATAATGGCAAACCATAACGACTG-AGCTTTCACTGTTCGATTAGCA-C 106283
Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952
| | |||| ||||||| ||| || | ||||||| || ||||||||||| | |
Sbjct 106282 GTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAA 106223
Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012
|||||| |||| || ||| |||||||| ||||||| ||| | | | ||| |||||||
Sbjct 106222 GTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCA 106163
Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072
| || ||||| || ||||||| |||| ||| ||||| || | || | |||||| ||||
Sbjct 106162 TGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTC 106103
Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132
| || || |||| || || | ||| || | || ||| |||||||| || |||| ||| |
Sbjct 106102 CAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAA 106043
Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192
| || | | ||||||| ||| |||||||||||| | ||||| || ||||||
Sbjct 106042 TAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAA 105983
Query 78193 AAACTCTCAACATTGGAA-TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251
| ||||| | |||||||| |||| || || || || || || |||||| | || || |
Sbjct 105982 ATACTCTTAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTG 105924
Query 78252 CCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATAT 78307
|| | || |||||| |||| | || || ||||| || || || || ||
Sbjct 105923 CCTTTGGCACGAATA----CAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAAT 105868
Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC---ATCATGTT 78364
| || || ||| | || | | ||||| || || || |||| |||| |
Sbjct 105867 CATTGCACATTGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGT 105811
Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424
| ||||||||| || | |||| | || || | ||| ||| | || || ||
Sbjct 105810 CAAAAGAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGA 105751
Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484
||||||||||| || || |||||||| ||||| ||||||| ||||| | || ||
Sbjct 105750 GGCATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATC 105691
Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT 78544
| |||||| || | || || ||||| | ||| || || || | || | | ||
Sbjct 105690 GTCTCCATGAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTT 105631
Query 78545 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604
||||||||| | || || || || | || ||||| ||||||||||| ||
Sbjct 105630 CCCATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACC 105571
Query 78605 AAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636
|| || | || ||||||||| |||| ||||
Sbjct 105570 GAAATCACGATCATAAATAATAGCAGAGTTTA 105539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694651997698400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |