Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq328 724 0.0 >seq328 Length=165906 Score = 724 bits (802), Expect = 0.0 Identities = 1309/1892 (69%), Gaps = 44/1892 (2%) Strand=Plus/Minus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 || || || | |||||| || |||| | | || |||||||| |||| ||| ||||| Sbjct 107411 TTTTTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATT 107352 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || |||||||| || |||| | | ||||| ||| ||||| ||| || || Sbjct 107351 CCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTA 107292 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || ||||| | ||||| ||| | ||||||||||||||| || || || ||||||||||| Sbjct 107291 GGCTCGGCCACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCA 107232 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 ||||| || || ||| || | ||||||||| | ||||| ||| | | | | Sbjct 107231 GCCATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAA---GATCGCGA 107175 Query 77010 TCATCT---GGAAG-GTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATTC 77063 ||| | |||| |||| ||||||||||||| || | | ||| || ||| |||| Sbjct 107174 ACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTT 107115 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || |||||||||| ||| || | | |||||||||| | || | | |||| |||| || Sbjct 107114 TTCATATCATCATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACC 107055 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | ||||||||| ||||| ||||||| | || || |||||| | ||||||||||| | Sbjct 107054 ACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAAT 106995 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 ||||| || || |||| |||||| |||||||| || || |||||||| || || || || Sbjct 106994 GATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAAC 106935 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA-AAGATC 77302 ||| || | || ||| || | || | ||||| || | || ||||||||| ||| || Sbjct 106934 GAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTC 106875 Query 77303 --TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || || | | ||||| | ||| ||||||||||| || || || || ||| Sbjct 106874 GTTGGAGTTTTA---TCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCT 106818 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 ||||| ||||| || || || | ||| || ||||||||||| ||||| || || || Sbjct 106817 TTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCA 106758 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 ||||||| ||||| || || | | || | | ||||| ||| ||| | ||| Sbjct 106757 AAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGA 106698 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 || | | ||||| || || || || || || ||||| || |||||||| || | ||| Sbjct 106697 AAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGC 106638 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 || |||||| | ||||||||||| | || ||||| || |||||||| |||||||| Sbjct 106637 CTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTA 106578 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 |||||| || |||| ||| || || |||| ||| ||||||||| || ||| Sbjct 106577 AGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCT 106518 Query 77661 A---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | ||||||||||| | || || || |||| ||| ||||| || | ||||| || | Sbjct 106517 GGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAG-G 106459 Query 77718 TTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| || | | || || ||||||| |||||| ||||| |||||||| | |||| Sbjct 106458 T--GCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTT 106401 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 ||||| ||||||||| |||| || || |||||| |||| || | || | || |||||| Sbjct 106400 TGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCA 106341 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TCATAGATTTGTATC 77892 | || ||||| ||||| | ||| | ||||| |||||| | | | |||| | | | Sbjct 106340 ACTTGCGATTCTATAATGGCAAACCATAACGACTG-AGCTTTCACTGTTCGATTAGCA-C 106283 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 | | |||| ||||||| ||| || | ||||||| || ||||||||||| | | Sbjct 106282 GTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAA 106223 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 |||||| |||| || ||| |||||||| ||||||| ||| | | | ||| ||||||| Sbjct 106222 GTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCA 106163 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | || ||||| || ||||||| |||| ||| ||||| || | || | |||||| |||| Sbjct 106162 TGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTC 106103 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | || || |||| || || | ||| || | || ||| |||||||| || |||| ||| | Sbjct 106102 CAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAA 106043 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | ||||||| ||| |||||||||||| | ||||| || |||||| Sbjct 106042 TAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAA 105983 Query 78193 AAACTCTCAACATTGGAA-TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 | ||||| | |||||||| |||| || || || || || || |||||| | || || | Sbjct 105982 ATACTCTTAGCATTGGAACTAAT-CCATTTGAAGTACCGTTCGTTCCACATATGGAAGTG 105924 Query 78252 CCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATAT 78307 || | || |||||| |||| | || || ||||| || || || || || Sbjct 105923 CCTTTGGCACGAATA----CAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAAT 105868 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC---ATCATGTT 78364 | || || ||| | || | | ||||| || || || |||| |||| | Sbjct 105867 CATTGCACATTGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGT 105811 Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424 | ||||||||| || | |||| | || || | ||| ||| | || || || Sbjct 105810 CAAAAGAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGA 105751 Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484 ||||||||||| || || |||||||| ||||| ||||||| ||||| | || || Sbjct 105750 GGCATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATC 105691 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT 78544 | |||||| || | || || ||||| | ||| || || || | || | | || Sbjct 105690 GTCTCCATGAATACCAAGAGCGACGCGCATTAGCATGTGTTGTGGACGCTCTGCAATTTT 105631 Query 78545 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604 ||||||||| | || || || || | || ||||| ||||||||||| || Sbjct 105630 CCCATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACC 105571 Query 78605 AAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 || || | || ||||||||| |||| |||| Sbjct 105570 GAAATCACGATCATAAATAATAGCAGAGTTTA 105539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651997698400