Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq328 706 0.0 >seq328 Length=165906 Score = 706 bits (782), Expect = 0.0 Identities = 1281/1854 (69%), Gaps = 34/1854 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| |||| ||| ||||| || |||||||| || |||| | | ||| Sbjct 107378 GCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 107319 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || ||| ||| | ||| || | || ||||| | ||||| ||| | |||||||||| Sbjct 107318 TGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCCACATGAACATTAAACGACTGACTT 107259 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || || ||||||||||| ||||| || || ||| || | ||||||| Sbjct 107258 TGATCAATAAATGCACCTCTATCAGCAGCCATCTTAATTGTGGATTTAACTGAAATTTCC 107199 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCT---GGAAGATTTG---TATTTTGAATG 75631 || | ||||| ||| | | | | ||| | |||| | || ||||||||||| Sbjct 107198 CACACTGTTTTATAAA---GATCGCGAACATTTTGGGGAATAGTTTCAATATTTTGAATG 107142 Query 75632 GATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTT 75691 || || | | || || ||| |||| || || ||||||| ||| || | ||| ||| Sbjct 107141 GAGCCCCTACTTGAAATTATTTTATTTTTCATATCATCATCCCATAAGTCCAACTCTGTT 107082 Query 75692 AAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG 75751 ||| | || | | |||| |||| || | ||||||||| ||||| ||||||| || || Sbjct 107081 AAATCCCTTAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 107022 Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 || |||||| | ||||||||||| | ||||| || || |||| |||||| ||||| || Sbjct 107021 TATATATTAGTTGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGGGCAGTAGAT 106962 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 || || |||||||| || || || || ||| || | || ||| || | || | ||| Sbjct 106961 GCTGTAGGCATAGGAGCTACTAACAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCT 106902 Query 75872 TTTAGATATTTCCAATCCCA-AAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930 || || | || ||||||||| ||| || | ||| |||||| | ||| |||||||| Sbjct 106901 TTCAGGTTTTGCCAATCCCATAAGTTC-GTTGGAGTTTTATCCCACATATCATATTGTAG 106843 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 ||| || ||||| || ||| ||||| |||||||| | || ||| || || Sbjct 106842 AATGCCATTGCTTACAGGACTTCCTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAG 106783 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA--TTAAGA 76048 ||| ||||| || ||||| || || ||||||| ||||| || || || || |||| | Sbjct 106782 TTCACAACTAGCTTCTAAAGCCCCAAAATAAATAGTTTCAAATAT-TTGTTGGTTTAAAA 106724 Query 76049 TCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCC 76108 | ||||| ||| ||| | ||| || | | ||||| || || || || | || Sbjct 106723 GACTA-GCTTCTTCACTTTCATAGGGAAAACGCATTAGAATTAAAGCGTCAGCGAAACCT 106665 Query 76109 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGG 76168 ||||| || |||||||| || | ||| || |||||| | | ||||||||| | ||| Sbjct 106664 TGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGG 106605 Query 76169 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTT 76228 ||||| || || ||||| |||||||| |||||| | |||| ||| || || ||| Sbjct 106604 TAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTTGGTTACATCTTTT 106545 Query 76229 AGTTTGAGAAAATCAAATTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCT 76285 | ||| ||||||||| || ||| | |||||||| ||||| || || || ||| Sbjct 106544 AATTTTTTGAAATCAAATGTTTTTTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCT 106485 Query 76286 AGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTA 76345 | ||| ||||| || | ||||| || | || | | || || || |||| |||| Sbjct 106484 AAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAATTTCTGTACATAAATTA 106425 Query 76346 CTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAA 76405 || || || ||||| |||| ||||||||| ||||||||| | ||||| || |||||| || Sbjct 106424 CTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAA 106365 Query 76406 AGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCT 76464 || | | || | |||||||||| || ||||| ||||| | ||| | ||||| Sbjct 106364 AGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGCAAACCATAACGACTG- 106306 Query 76465 AGCTTTTATTATA-GATTTGTATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTC 76521 |||||| | | | |||| | | | || ||||| ||||||| ||| | | || Sbjct 106305 AGCTTTCACTGTTCGATTAGCA---CGTCCCTCTTGCTCATATTTGACATAAAGTTGCTC 106249 Query 76522 AAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCA 76581 ||||| || ||||||||||| | | |||||||||| || ||||||||||| ||||| Sbjct 106248 AAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGACACATCAACGACCA 106189 Query 76582 CTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 76641 | ||| | | | |||||||||||| || ||||| || ||||||| |||| ||| || Sbjct 106188 GTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAG 106129 Query 76642 ATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAAT 76701 ||| || | || |||||| ||||| || || |||| || |||| || || | || Sbjct 106128 ATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAAC 106069 Query 76702 ATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTG 76761 ||| |||||||| || |||| ||| || || | |||| |||| ||| ||||||||| Sbjct 106068 ATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTG 106009 Query 76762 ATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA-TAATGCCGTTAGATG 76820 ||| | ||||| || |||||| | ||||| | |||||||| |||| || || || | Sbjct 106008 ATCAACATATCGTGCCACATTATTAAATACTCTTAGCATTGGAACTAAT-CCATTTGAAG 105950 Query 76821 TACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTA 76880 |||| || |||||| | || || | || ||||||||| | || | || || | Sbjct 105949 TACCGTTCGTTCCACATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAA 105890 Query 76881 TTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTA 76940 |||| || || ||| || || | ||||| ||| | || | | | || || || | Sbjct 105889 TTCCACCCGCTGATTTGGAAATCATTGCACATTGTTCAACTGATTTAAAAATACCTTCAA 105830 Query 76941 TACTATC---ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | ||| || ||| ||| || ||||||||| || | |||| | || || Sbjct 105829 TTGAATCCGAATTCAT--TGTCAA-AAGAAAACATGAGGATAGTTGAGGGCGATTTGTAG 105773 Query 76998 CTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATG 77057 | ||| ||| | || || || ||||| || || || || |||||||| ||||| | Sbjct 105772 CAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAG 105713 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 |||||| | |||| | ||||| | |||||| || | |||||| ||||| | ||| | Sbjct 105712 TTTCAACAGCTGCACCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATTAGCATGT 105653 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | || || || ||| || | || ||||||||| | || || || || | || | Sbjct 105652 GTTGTGGACGCTCTGCAATTTTCCCATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCT 105593 Query 77178 TAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 |||| ||||||||||| || || || | || ||||||||| | || |||| Sbjct 105592 TAAATCCAAAATAGTTATAACCGAAATCACGATCATAAATAATAGCAGAGTTTA 105539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917155899200