Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 2e-23
seq35 105 2e-17
seq6 102 2e-16
>seq23
Length=1278451
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||||||||| || ||||||||||| || | | ||| | |||||
Sbjct 1263194 AGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263253
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1263254 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263313
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 1263314 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263373
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||||||||| |||| ||||||
Sbjct 1263374 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 1263422 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263481
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1263482 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263541
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 1263542 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263601
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||||||||| |||| ||||||
Sbjct 1263602 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 1263650 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263709
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1263710 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263769
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 1263770 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1263829
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||||||||| |||| ||||||
Sbjct 1263830 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 1263878 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1263937
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1263938 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1263997
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 1263998 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTT 1264057
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||||||||| |||| ||||||
Sbjct 1264058 TTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 1264106 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCC 1264165
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 1264166 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1264225
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || | || || |||
Sbjct 1264226 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTT 1264285
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || | || ||||| |||| |||||||||
Sbjct 1264286 TTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1264320
>seq35
Length=832945
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | ||| ||||| || ||||||||||| |||| ||||| | || ||
Sbjct 773665 GAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 773724
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | || || ||||| ||
Sbjct 773725 CTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 773784
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| |||| | | |||| || ||| || || || || || ||
Sbjct 773785 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 773844
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||||||||||| ||||||
Sbjct 773845 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | ||| ||||| || ||||||||||| |||| ||||| | || ||
Sbjct 773893 GAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 773952
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | || || ||||| ||
Sbjct 773953 CTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 774012
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| |||| | | |||| || ||| || || || || || ||
Sbjct 774013 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 774072
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||||||||||| ||||||
Sbjct 774073 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105
Score = 105 bits (116), Expect = 2e-17
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | ||| ||||| || ||||||||||| |||| ||||| | || ||
Sbjct 774121 GAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 774180
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | || || ||||| ||
Sbjct 774181 CTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 774240
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| |||| | | |||| || ||| || || || || || ||
Sbjct 774241 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGT 774300
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || ||||||||||||| |||||| ||
Sbjct 774301 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| | ||| ||||| || ||||||||||| |||| ||||| | || || || ||
Sbjct 773446 ATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTG 773505
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
|| ||||| ||||| | | |||||| || | | || || ||||| || || || ||
Sbjct 773506 CTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 773565
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
|||||| |||| | | |||| || ||| || || | || || || ||||| ||
Sbjct 773566 AGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 773625
Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||||||||||| ||||||
Sbjct 773626 CAGGGTCTTCACGAAGATCTGCAT 773649
>seq6
Length=3104374
Score = 102 bits (112), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || |
Sbjct 2898460 CAAG-TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCA 2898402
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 2898401 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 2898342
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| |||| | | |||| || ||| || || | || || || ||||
Sbjct 2898341 TCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGC 2898282
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| |||||||| ||||| || | ||||||||
Sbjct 2898281 CAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153792194258385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |