Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq39 84.2 3e-11 seq26 84.2 3e-11 seq224 82.4 9e-11 seq8 82.4 9e-11 >seq39 Length=736423 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || || |||||||||||||||||| Sbjct 89822 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGCCGCTGGTTCGAATCCAGC 89880 >seq26 Length=998041 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || || |||||||||||||||||| Sbjct 454355 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGCCGCTGGTTCGAATCCAGC 454413 >seq224 Length=190040 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 133390 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 133449 Query 17764 GTCCCTTCAGTCCCGTATGCCACttt 17789 | ||| ||| || | |||||||| Sbjct 133450 GCCCCGTCACTCGC----GCCACTTT 133471 >seq8 Length=1553183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 839216 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 839275 Query 17764 GTCCCTTCAGTCCCGTATGCCACttt 17789 | ||| ||| || | |||||||| Sbjct 839276 GCCCCGTCACTCGC----GCCACTTT 839297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292776819600