Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq35 141 7e-29
seq6 131 1e-25
seq23 118 8e-22
>seq35
Length=832945
Score = 141 bits (156), Expect = 7e-29
Identities = 147/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| | || |||| ||||||||||| ||||||||
Sbjct 773458 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAA 773517
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||||||||||||||| || | || ||||| ||| ||||| ||| | |
Sbjct 773518 GATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 773577
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||||| || || ||||| || || |||||||||||
Sbjct 773578 CTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 773637
Query 44326 GAAGATTTGCATG 44338
|||||| ||||||
Sbjct 773638 GAAGATCTGCATG 773650
Score = 129 bits (142), Expect = 4e-25
Identities = 146/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| | || |||| ||||||||||| ||||| ||
Sbjct 774142 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 774201
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||||||||||||||||| || | || ||||| ||| ||||| ||| | |
Sbjct 774202 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 774261
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| || || |||||||||||
Sbjct 774262 CTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTCAC 774321
Query 44326 GAAGATTTGCATGATG 44341
|||||| |||||| ||
Sbjct 774322 GAAGATCTGCATGTTG 774337
Score = 127 bits (140), Expect = 1e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| | || |||| ||||||||||| ||||| ||
Sbjct 773686 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773745
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||||||||||||||||| || | || ||||| ||| ||||| ||| | |
Sbjct 773746 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 773805
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| || || |||||||||||
Sbjct 773806 CTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 773865
Query 44326 GAAGATTTGCATG 44338
|||||| ||||||
Sbjct 773866 GAAGATCTGCATG 773878
Score = 127 bits (140), Expect = 1e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| | || |||| ||||||||||| ||||| ||
Sbjct 773914 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773973
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||||||||||||||||| || | || ||||| ||| ||||| ||| | |
Sbjct 773974 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATT 774033
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| || || |||||||||||
Sbjct 774034 CTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 774093
Query 44326 GAAGATTTGCATG 44338
|||||| ||||||
Sbjct 774094 GAAGATCTGCATG 774106
>seq6
Length=3104374
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| |||| || ||| | || ||
Sbjct 2898463 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 2898404
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| ||||| ||||||| |||||||||||||| || | || ||||| |||
Sbjct 2898403 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 2898344
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||| | || || ||||||| || || |||||
Sbjct 2898343 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2898284
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || ||||| || ||||||||
Sbjct 2898283 GCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
>seq23
Length=1278451
Score = 118 bits (130), Expect = 8e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| || || ||| |||||| ||||||||||| ||
Sbjct 1263403 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1263462
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || ||||||||||| ||||| ||||| | ||||||||| ||||
Sbjct 1263463 AGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGG 1263522
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | |
Sbjct 1263523 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 1263581
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || || || || || || |||||||| ||||| |||||
Sbjct 1263582 CAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 118 bits (130), Expect = 8e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| || || ||| |||||| ||||||||||| ||
Sbjct 1263631 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1263690
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || ||||||||||| ||||| ||||| | ||||||||| ||||
Sbjct 1263691 AGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGG 1263750
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | |
Sbjct 1263751 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 1263809
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || || || || || || |||||||| ||||| |||||
Sbjct 1263810 CAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 118 bits (130), Expect = 8e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| || || ||| |||||| ||||||||||| ||
Sbjct 1263859 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1263918
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || ||||||||||| ||||| ||||| | ||||||||| ||||
Sbjct 1263919 AGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGG 1263978
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | |
Sbjct 1263979 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 1264037
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || || || || || || |||||||| ||||| |||||
Sbjct 1264038 CAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
||||| || | || | || ||||| || || || |||||| ||||||||||| ||
Sbjct 1263176 ATTCCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCA 1263235
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| || || | || ||||||||||| ||||| ||||| | ||||||||| ||||
Sbjct 1263236 GAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGG 1263295
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | ||
Sbjct 1263296 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCTC 1263354
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || || || || || || || |||||||| ||||| |||||
Sbjct 1263355 AACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Score = 114 bits (126), Expect = 9e-21
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| || || ||| |||||| ||||||||||| ||
Sbjct 1264087 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1264146
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || ||||||||||| ||||| ||||| | ||||||||| ||||
Sbjct 1264147 AGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGG 1264206
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | |
Sbjct 1264207 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 1264265
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||| || || || || || || | ||| ||||| ||||| |||||
Sbjct 1264266 CAACCTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359981910413895
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |