Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 159 8e-34 seq23 150 4e-31 seq35 132 1e-25 seq234 129 1e-24 >seq6 Length=3104374 Score = 159 bits (176), Expect = 8e-34 Identities = 165/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| |||||||||||||| || || || |||||| | ||||| || Sbjct 2898251 AAAATGC---AAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAG 2898307 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| ||||| |||||||| || || || || || Sbjct 2898308 CCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCA 2898367 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || ||||| | ||||| |||| Sbjct 2898368 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 2898427 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || ||||| |||| Sbjct 2898428 TACAACATCCAGAAGGAGTCGACCCTGCA-CTTG 2898460 >seq23 Length=1278451 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 1263402 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1263343 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 1263342 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263283 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | |||||| | || || ||| || Sbjct 1263282 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263223 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1263222 CAGAAGGAGTCTACTCTCCAT 1263202 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 1263630 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1263571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 1263570 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263511 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | |||||| | || || ||| || Sbjct 1263510 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263451 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1263450 CAGAAGGAGTCCACTCTCCAT 1263430 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 1263858 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1263799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 1263798 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263739 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | |||||| | || || ||| || Sbjct 1263738 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263679 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1263678 CAGAAGGAGTCCACTCTCCAT 1263658 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 1264086 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1264027 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 1264026 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263967 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | |||||| | || || ||| || Sbjct 1263966 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263907 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1263906 CAGAAGGAGTCCACTCTCCAT 1263886 Score = 143 bits (158), Expect = 6e-29 Identities = 158/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| | || || ||||| |||||| | ||||| || Sbjct 1264320 AAAATGC---AGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAGGTTGAG 1264264 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| |||||||| || ||||| |||||||| || |||||||| || Sbjct 1264263 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 1264204 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || ||||| || ||||| | |||||| | || Sbjct 1264203 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGAC 1264144 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| |||| || || || || || ||| Sbjct 1264143 TACAACATCCAGAAGGAGTCCACTCTCCAT 1264114 >seq35 Length=832945 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||||||||| || ||| ||| Sbjct 773874 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 773815 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 773814 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 773755 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || ||| | ||| | |||| || ||| || Sbjct 773754 CGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 773695 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 773694 CAGAAGGAGTCGACTTTGCAT 773674 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||||||||| || ||| ||| Sbjct 774102 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCGGAC 774043 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 774042 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 773983 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || ||| | ||| | |||| || ||| || Sbjct 773982 CGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 773923 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 773922 CAGAAGGAGTCGACTTTGCAT 773902 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || ||||||||||| || ||| ||| Sbjct 774330 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCCTCGAGGTCGAGCCCTCGGAC 774271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 774270 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 774211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || ||| | ||| | |||| || ||| || Sbjct 774210 CGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 774151 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 774150 CAGAAGGAGTCGACTTTGCAT 774130 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||| | ||||| || ||| ||| Sbjct 773646 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCGGAC 773587 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 773586 ACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 773527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| || || ||| | ||| | |||| || ||| || Sbjct 773526 CGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAACATC 773467 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || ||||| | || ||| Sbjct 773466 CAGAAGGAGTCGACTTTGCATTTGGTATTG 773437 >seq234 Length=227530 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || || || ||||| ||| || || Sbjct 10132 CAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCGGAT 10073 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||||||||||||||| ||||| || || ||| Sbjct 10072 ACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAA 10013 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || || | ||||||||| | Sbjct 10012 CGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAACATT 9953 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 9952 CAGAAGGAGTCCACCTTGCAT 9932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701356870390