Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1592 129 6e-25 >seq1592 Length=614636 Score = 129 bits (142), Expect = 6e-25 Identities = 360/544 (66%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 ||||| | | |||| || || || ||||| || | || ||||| | | ||| || Sbjct 387660 AGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGC 387719 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 ||||| || || |||| |||||||| || || ||||| | |||||| |||| ||| Sbjct 387720 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCA 387779 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || ||| |||||| || || || |||| ||||| || || | || ||||| | Sbjct 387780 AAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 387839 Query 17126 GTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 | || ||| | || ||||| | |||| || || || |||||| || | Sbjct 387840 TTGGCCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTA--CAGCC 387896 Query 17185 --CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| || || || || || || || | || ||||| | || ||| || || Sbjct 387897 GGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTG 387956 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| | ||||||||| |||||||| | ||||||||||||||||| || ||||| Sbjct 387957 TCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAG 388016 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGT 17360 ||||| || || || | || || || ||| || || || || || | | ||| |||| Sbjct 388017 AAGCAACGTGCCTCTGTGATCTGCACCTCCTGAC-TA-AAGCGCTCGACCAAATTCTCGT 388074 Query 17361 TCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT 17420 | || |||||||| || ||||| || |||| | ||| || || || |||| Sbjct 388075 TAACAATGCCGTCCGAGGCAGCGAAGAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGT 388134 Query 17421 CCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCC 17480 || ||| | ||||||| | || || |||| |||||| ||||| ||||| Sbjct 388135 TGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACGGTCC 388194 Query 17481 AAAA 17484 | || Sbjct 388195 AGAA 388198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517462546869840