Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1635 542 3e-149 seq1592 150 2e-31 >seq1635 Length=10282868 Score = 542 bits (600), Expect = 3e-149 Identities = 1256/1877 (67%), Gaps = 22/1877 (1%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||| | || ||||| || | || || ||||| || |||| ||| |||||||| Sbjct 1117708 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCC 1117649 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 |||||||| || |||| | ||||||| || ||| | ||| || | || Sbjct 1117648 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 1117589 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 1117588 CTCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 1117529 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 1117528 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 1117470 Query 53037 CTTCTGGAAG-GTTTGTAT-TCT-GAATAGATCCACCATCTACCA-TAATCCTATTCTTG 53092 || |||| |||| || ||| |||| || || || || | | || |||| || Sbjct 1117469 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 1117411 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 |||||||||| |||||| | || |||||| | || | | ||| |||| || ||| Sbjct 1117410 ATCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 1117351 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 |||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 1117350 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 1117291 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 1117290 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 1117231 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 || |||| |||| || | || | || || || || ||||| ||| || | || Sbjct 1117230 TTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTT 1117171 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 53391 || ||||||||| || || || | | || |||| |||| Sbjct 1117170 GGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACT-TCCTTCATA 1117112 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 || || ||| ||| | ||||| ||||||||||| || || | || || |||| Sbjct 1117111 GGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATA 1117052 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 ||| ||||| || || | | |||| | ||||| ||| ||| | ||| || Sbjct 1117051 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 1116992 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | | ||| || ||||| ||||| ||||||||||| |||||||| || | ||| || Sbjct 1116991 CATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAA 1116932 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||| || | | |||||||| | || ||||| || || ||||||||||| || || || Sbjct 1116931 ATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TTGTCCATCTAT 53688 | || ||| |||| || || || | ||| |||||| | || | | | | Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGGTGT 1116812 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||| |||||||||| ||| || || || | ||| || || || ||||||| || | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || | | || || || || | |||||| || || ||||| || | |||||||||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||||| | ||||| | ||||||| |||| ||| |||| ||||||| || | || || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTA-TTATAGATTTGTATCTCTTTTCTC 53927 ||||||||| || ||| | | | || | | | | |||| | | || |||| Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTC-CTTCTT 1116573 Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987 || ||| ||| | |||||| | || |||||||||| | | ||||||| Sbjct 1116572 GCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 1116513 Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047 ||| || ||||||||||||||||| | | | ||| || |||||||| || |||| Sbjct 1116512 ATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGAT 1116453 Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 |||||||||| ||||| ||| ||||| | | ||| | ||| || ||||| || || Sbjct 1116452 CAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTC 1116393 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 |||| || || | ||| | | || ||| |||||||| || || || || || | | Sbjct 1116392 TTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGG 1116333 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 | ||||| | ||| ||||||||||| | |||| || |||||| ||||||| | Sbjct 1116332 CACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAAAACTCTTA 1116273 Query 54228 ACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 |||||||| |||| ||||| || | ||| || || || | || | | || | ||| Sbjct 1116272 GCATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATGGATGTGCCTTTAGCA 1116214 Query 54287 CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 ||||| | || || || || || ||||| || || || | ||| ||| || Sbjct 1116213 CGAATGCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCAGTGCACATTGT 1116154 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAACAG 54403 | | | | | | || || || || ||| || ||| ||| || |||||||| Sbjct 1116153 TCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAACAT 1116097 Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 |||| ||| | ||| | ||| | ||| ||| | || || || || |||||||| Sbjct 1116096 GAGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAA 1116037 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || |||||| ||||| ||||| || || | || | || ||||| | |||||| Sbjct 1116036 TATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATA 1115977 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 || | ||||| ||||| | |||||| || || | ||| | || || ||||| || Sbjct 1115976 CCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTA 1115917 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 || | ||||| || | || ||||| ||||||||||| || ||| ||||| || Sbjct 1115916 AGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCA 1115857 Query 54644 TAAATAATAACTGAGTT 54660 ||||||||| | ||||| Sbjct 1115856 TAAATAATAGCGGAGTT 1115840 >seq1592 Length=614636 Score = 150 bits (166), Expect = 2e-31 Identities = 354/532 (67%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || |||||||| ||||| ||||| | || | |||||||| || || || ||| Sbjct 387681 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 387740 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || |||||||| || |||||||| || || ||||| ||| |||||| ||| Sbjct 387741 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 387800 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCTGTCATG--TATC 24314 ||||| || |||||||||||||||| | || || | || || | || | |||| Sbjct 387801 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 387860 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || ||||| || ||||| |||||| ||||| ||||| |||||||| || Sbjct 387861 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 387920 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 | |||| || | || | || || ||||| | | || ||||| || Sbjct 387921 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 387980 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 || || | || || ||||| || || || |||||||| || | ||||| || ||||| Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 || || || ||| || || | ||||| || || || || ||||| ||| || || Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || |||| ||||| ||||| || |||| || || ||| || | Sbjct 388101 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 388160 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 || || |||| |||||| |||||||| ||||| || || || || |||| Sbjct 388161 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGCCT 388212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593626322526240