Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1626 178 2e-39 >seq1626 Length=3432795 Score = 178 bits (196), Expect = 2e-39 Identities = 242/338 (72%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 145606 AAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTC 145665 || || || |||| ||| ||| | | | ||| | ||| | ||||| ||||| || | Sbjct 3220019 AAATCTTCAATGTTCTCAACCTGTCGCTTGATGTTCAGCTTTGGAAACGGCCGCGGCTTG 3219960 Query 145666 CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGG 145725 | ||||||| |||||| || || || ||||| || || || || ||||| |||| | Sbjct 3219959 CGTTTCAGCTGCTCCTTCAGTGGATCAACATGGTTAAGATACACATGAGCGTCGCCCATG 3219900 Query 145726 ACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGG 145785 |||||| ||||| || | || | ||| || | ||||| | |||||||||||||||| Sbjct 3219899 GTGTGGATAAAGTCGCCCGTCTTCAAGCCAGTTACATGGGCTATCATGTAGGTCAGCAGG 3219840 Query 145786 GAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGC 145845 | |||| ||| |||||||| ||||| || || |||||||| | |||||| |||||| Sbjct 3219839 GCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGTCGGCGCTGCGCTGATACAGC 3219780 Query 145846 TGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGC 145899 ||||| || ||||| |||| || ||||||||||| ||| ||||||||| Sbjct 3219779 TGGCACGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACTGTGCCAGACAATGGCAGGGC 3219720 Query 145900 GGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 || || ||||| ||| | |||| ||| ||||| || Sbjct 3219719 GGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGC 3219682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589982107425520