Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1626 122 2e-22 seq1592 120 6e-22 >seq1626 Length=3432795 Score = 122 bits (134), Expect = 2e-22 Identities = 285/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442 |||| | || | ||||||| |||| || || || || || || ||||| || |||||||| Sbjct 3219513 CGATCGCGCCGTGGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGC 3219572 Query 35443 TGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG-GCCAATA 35501 ||||||| || || || || | || ||||| || || |||||| ||||| Sbjct 3219573 CGAATATGGGACTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGCGCCAAG- 3219631 Query 35502 TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561 || | | ||| | || | ||||| ||| | |||| || ||| | |||||||||| Sbjct 3219632 TAATTGACACCATCAGGCATAATCCGTCCGATCGTCGGATCATCATGTCTGCATGGAATC 3219691 Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTG 35620 | |||| | | | ||||| ||||| || ||||| || ||| | || || || || Sbjct 3219692 CGCTGGACATACCCAAAATGGCACTTCCGCCCTGCCAT-TGTCTGGCACAGTTCTACGTC 3219750 Query 35621 GCTAAT------GGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674 | | ||||| ||||||||||| |||||||||| |||| || | || | Sbjct 3219751 TCGCAGACCCGCGGAGAGCTGTCGTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTT 3219810 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734 |||||||| ||||| || || || ||| | || ||||| | |||| ||| | | Sbjct 3219811 GGCGTGCCATTCAACATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACT 3219870 Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCAC 35794 || | || |||| || ||||||| ||| | || ||||| || | ||| || ||| Sbjct 3219871 GGCTTGAAGACGGGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCAT 3219930 Query 35795 ATTGA 35799 |||| Sbjct 3219931 GTTGA 3219935 >seq1592 Length=614636 Score = 120 bits (132), Expect = 6e-22 Identities = 295/445 (66%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| |||||||||| || || |||||||||||||||||||| || || || || || Sbjct 387826 ATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTT 387767 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | ||||| | ||| | |||| ||||| |||| |||||| ||| | || || | Sbjct 387766 TGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 387707 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATA 102092 |||||||||||||| |||||||||| |||| || | | | | || | Sbjct 387706 GACGAAGGTCTTCACTGCGACTTTGC---GGTGCTCATGTATCACCATCTAGTGCAGCGG 387650 Query 102093 CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| | | | || | || | || || ||| || || || ||| || || || | Sbjct 387649 CCCAAGC--GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGT 387592 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | ||||| | ||||||| || || || | || |||||||| | ||| ||||| Sbjct 387591 TCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGT 387532 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 |||| || || ||||| ||| || | | || | || | | ||| ||| || Sbjct 387531 ACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACA 387472 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 || || || ||| |||||||| | || || || || ||||| ||||| |||| Sbjct 387471 CTAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTG 387412 Query 102333 AAAAGAGAGTCGCCGAGTATCAACG 102357 | |||| || |||||||| || || Sbjct 387411 AGAAGAAGGTGGCCGAGTACCAGCG 387387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989421226420290