Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1635 544 1e-149 seq1592 132 6e-26 >seq1635 Length=10282868 Score = 544 bits (602), Expect = 1e-149 Identities = 1256/1876 (67%), Gaps = 20/1876 (1%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | || ||||| || | || || ||||| || |||| ||| |||||||| Sbjct 1117708 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCC 1117649 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 1117648 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 1117589 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 1117588 CTCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 1117529 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 1117528 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 1117470 Query 62275 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTACCA-TAATCCTATTCTTG 62330 || |||| |||| || ||| ||||||| || || || | | || |||| || Sbjct 1117469 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 1117411 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 |||||||||| |||||| | || |||||| | || | | ||| | || || ||| Sbjct 1117410 ATCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 1117351 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || ||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 1117350 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 1117291 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 1117290 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 1117231 Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 || |||| |||| || | || | || || || || ||||| ||| || | || Sbjct 1117230 TTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTT 1117171 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || | |||||||||||| || || || | | || |||| |||| Sbjct 1117170 GGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACT-TCCTTCATA 1117112 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || |||||| ||| | ||||| |||| |||||| || || | || || |||| Sbjct 1117111 GGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATA 1117052 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 ||| |||||||| || | | |||| | ||||| ||| ||| | ||| || Sbjct 1117051 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 1116992 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | | ||| || ||||| ||||| ||||||||||| |||||||| || | ||| || Sbjct 1116991 CATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAA 1116932 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| || | | |||||||| | || ||||| || || ||||||||||| || ||||| Sbjct 1116931 ATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---T 62926 | || ||| |||| || || || | ||| |||||| | ||| | Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGGTGT 1116812 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 ||| |||||||||| ||| | || || | ||| || || || ||||||| || | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | | || || || || | |||||| || || || || || | |||||||||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 |||||| | ||||| | ||||||| |||| ||| |||| ||||||| || | || || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTC 63165 ||||||||| || ||| | | | || | | | | |||| | | ||||| || Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-CTT 1116573 Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 || ||| ||| | ||| || | || |||||||||| | | | ||||| Sbjct 1116572 GCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 1116513 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 ||| || ||||||||||||||||| | | | ||| || |||||||| || |||| Sbjct 1116512 ATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGAT 1116453 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 |||||||||| ||||| ||| ||||| | || ||| | ||| || ||||| || || Sbjct 1116452 CAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTC 1116393 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 1116392 TTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGG 1116333 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 | ||||| | ||| ||||||||||| | |||| || |||||| ||||||| | Sbjct 1116332 CACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAAAACTCTTA 1116273 Query 63466 ACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 |||||||| |||| || || || |||| || || || | || | || | ||| Sbjct 1116272 GCATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATGGATGTGCCTTTAGCA 1116214 Query 63525 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 ||||| | || || || ||||| ||||| || || || | ||| ||| || Sbjct 1116213 CGAATGCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCAGTGCACATTGT 1116154 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGC 63642 | | | | | | || ||||| || ||| ||| |||| | | |||||||| Sbjct 1116153 TCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACATG 1116096 Query 63643 TAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63702 |||| ||| | ||| | ||| | ||| ||| | || || || || |||||||| Sbjct 1116095 AGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAAT 1116036 Query 63703 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63762 || |||||| ||||| ||||| || || | || | || ||||| | |||||| | Sbjct 1116035 ATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATAC 1115976 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCA 63822 | | ||||| ||||| | |||||| || || | ||| ||||||| ||||| || | Sbjct 1115975 CAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAA 1115916 Query 63823 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63882 | ||||| || | || ||||| ||||||||||| || ||| ||||| || | Sbjct 1115915 GTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCAT 1115856 Query 63883 AAATAATAACCGAATT 63898 |||||||| | || || Sbjct 1115855 AAATAATAGCGGAGTT 1115840 >seq1592 Length=614636 Score = 132 bits (146), Expect = 6e-26 Identities = 350/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || |||||||| ||||| ||||| | || | ||||| || || || || ||| Sbjct 387681 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 387740 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || |||||||| || |||||||| || || || || || |||||||||| Sbjct 387741 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 387800 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33761 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 387801 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 387860 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 387861 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 387920 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 | |||| || | || | || || || || | | || ||||| || Sbjct 387921 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 387980 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || | || || ||||| ||||| || |||||||| || | ||||| || |||||| Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || || ||| || || | ||||| || || || || || || ||| || || Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || |||| ||||| ||||| || |||| || || ||| || | Sbjct 388101 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 388160 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || || |||| |||||| |||||||| ||||| || || || || |||| Sbjct 388161 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGCCT 388212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629716530020640