Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1635 426 1e-114 >seq1635 Length=10282868 Score = 426 bits (472), Expect = 1e-114 Identities = 1238/1867 (66%), Gaps = 54/1867 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||| | || | || | |||||| | | |||||||||||| ||| Sbjct 1117704 TCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCCGGTT 1117645 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| | ||||||| || |||| |||| |||| | || | Sbjct 1117644 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGCTCT 1117585 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| | | | | ||| ||||||||||| ||||| |||||||| || || |||||| Sbjct 1117584 GCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATT 1117525 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | ||||| || || ||||| || |||||||| | | | || | Sbjct 1117524 TTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAACCTTTTGG 1117465 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTA-TGTAACACAATTGTATTCTTTATGTC 37085 || | | || | || |||||| || || | || || | ||| |||| || || || Sbjct 1117464 GGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAA-ATTATTTTATTTTTCATCTC 1117406 Query 37086 ATTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 || || ||| | | | | | | | ||| || ||||||| || |||| || || |||| Sbjct 1117405 ATCATCCCATA-AGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACTTGAA 1117347 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || ||||||||||||| ||| ||||| ||||| | ||||||||||| | || || | Sbjct 1117346 ATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATTCGT 1117287 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||||| | ||||| | |||||||| |||||||| || |||| || | ||| | Sbjct 1117286 TATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAATTCC 1117227 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATT-CCAATCCCATAAATCTGTTGGG 37323 | | ||| || | ||||| |||| || | || ||||||||||| | ||||| Sbjct 1117226 TAATTCCGTGCTTTTTAATG-TCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTTGGA 1117168 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | || ||||||||||||||||||||| || || ||| | ||| | | ||| || Sbjct 1117167 GTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACTTCCTTCATAGGTT 1117108 Query 37384 TCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||| ||| ||||| | ||| ||||| ||||||| ||| || || || |||| | Sbjct 1117107 TCATATACTCC--AAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATAAA 1117050 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 ||||||| || |||||| ||||| | ||||||||||| || | | | | | || Sbjct 1117049 TTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCA 1116990 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| || || | ||||| ||||| |||||||| ||||| || || | ||| | || Sbjct 1116989 TTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAAT 1116930 Query 37562 TAGA--TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | || ||| | | |||| || || ||||| ||||| ||||| ||||| || ||||| Sbjct 1116929 TGGACTTCTTG--GCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT-----A 37674 ||| | | |||| || | | | | || || | ||| || ||||||| || Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAA-AT-CATACGTTTTTTCTGGT 1116814 Query 37675 TTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA 37734 | || || | ||| | || || ||| ||| || ||||| || ||||| | | Sbjct 1116813 GTTACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATC--AGGTG 1116756 Query 37735 CTAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTT 37792 || | | | | ||| |||||||| | |||||| || |||| || || | ||| || Sbjct 1116755 CTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTT 1116696 Query 37793 GATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGT-TCTATT 37851 ||||| ||| ||||||| ||||| ||| | || || || || ||| | || || | | Sbjct 1116695 GATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGG-GTTACCAGTCTCCACT 1116637 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC-GATCGCTT-TAAtttttt 37909 || | || ||||||| ||||||| |||| || | ||| || | | | Sbjct 1116636 TGCGATTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCT 1116577 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAAT 37968 |||| || |||| | ||| | | || |||| ||| ||||| ||||| | Sbjct 1116576 TCTT--GCTCATATTTGACATA-GAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGG 1116520 Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || ||||||| ||||||||| | ||||| ||||| | || || |||| ||| Sbjct 1116519 CCAGGACATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATG 1116460 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAA-ATCTTTGGTTCTATATTCTTCGTTCCC 38087 || | |||||| | ||||| || ||||| || ||| | ||| | |||||| || Sbjct 1116459 AAAAGATCAGGAATCCATAGAGC-GTAAAAAAGATCACGTGCTCTGTTTTCTTCTTT--- 1116404 Query 38088 TACATTCTTTCTT---AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 | || | |||||| | | || ||| || || | ||| | ||||| || |||| ||| Sbjct 1116403 TCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATA 1116344 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || || |||||||| |||||||||||| || ||||| | ||||| Sbjct 1116343 AATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATT 1116284 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | | ||||| ||| || |||| ||||| || | ||||| | || |||| | || Sbjct 1116283 AAAAACTCTTAGCATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATATGGATGT 1116224 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTA 38323 || ||||| || || | | | | || ||| ||||||||||| || || || | Sbjct 1116223 GCCTTTAGCACGAAT-GCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCA 1116165 Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCC---TTTATTGGTA 38380 || ||||||| | | | ||| |||||||| || || |||| || |||| | Sbjct 1116164 GTGCACATTGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGTCA 1116108 Query 38381 GTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 | |||||| |||| |||||| | || ||| | || ||| | || || || Sbjct 1116107 AAAGAAAACATGAGGACAATTGAGGTCGAT-TTGTTGCAGCAGCAAAAAGCGTTGGCGAG 1116049 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCA 38499 ||||| | || || ||| |||| || || ||||| | | | |||| ||||| Sbjct 1116048 GCATGCGTAAAATATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCG 1115989 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 | || |||||||| |||| || | ||| ||||| |||||||| | |||| ||||| Sbjct 1115988 TCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTC 1115929 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAA 38619 ||| ||||||||||| || || | || || | ||||||||| |||| | Sbjct 1115928 CCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCA 1115869 Query 38620 TAATCTC 38626 |||||| Sbjct 1115868 AAATCTC 1115862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468449613482720