Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1626 158 1e-33 >seq1626 Length=3432795 Score = 158 bits (174), Expect = 1e-33 Identities = 323/479 (67%), Gaps = 12/479 (3%) Strand=Plus/Minus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 || |||||| |||||||| ||||| | | |||||| | ||| |||||||| Sbjct 3219989 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 3219930 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| || || || ||||| |||| |||||| | |||||| |||| ||| ||| Sbjct 3219929 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 3219870 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || || || |||| || ||||| ||||||||| ||||||||| || || || || Sbjct 3219869 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCA 3219810 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ 21110 ||||||||||||||| | ||| ||||||||||| |||||||| || || | | Sbjct 3219809 AGGCCCATGTCGGCGCTGCGCTGATACAGCTGGCACGACAGCTCTCCGCGGGTCTGCGAG 3219750 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| ||||| || | || || || || || ||||| | | |||| || Sbjct 3219749 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGA 3219690 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGG---CCGCCTGTTAATTAGATCCACC 21227 ||||| || |||| | ||| || |||||| || ||||| || || | Sbjct 3219689 TTCCATGCAGACATGATGATCCGACGATCGGACGGATTATGCCTG---ATGGTGTCAATT 3219633 Query 21228 ACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCC 21287 || | |||| ||||| | |||| || ||||| ||||| || || || Sbjct 3219632 ACTTGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCCCATATTCG 3219573 Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || ||||| || | |||||| || || || || || |||||||| ||| || ||| || Sbjct 3219572 GCACCAAAGTGGCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGATC 3219514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427709068830240