Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1592 104 2e-17 seq1636 84.2 2e-11 >seq1592 Length=614636 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||||||||| || ||||| || | ||| ||| ||||| | || || |||||| Sbjct 387820 GCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTG 387761 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| || || | || ||||||||| |||| |||||||||| Sbjct 387760 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAA 387701 Query 22870 GGTCTACACTGTGACTTTGC 22889 ||||| ||||| |||||||| Sbjct 387700 GGTCTTCACTGCGACTTTGC 387681 >seq1636 Length=11822988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 33565 CGCATACCAGAGATGGGCGACAAGTTTGCAT-CGTTCACGGCCCAGAAGGGCACGTGCGG 33623 ||||| ||| |||| |||||||||||||| | | |||||| |||||||| ||||| || Sbjct 7016493 CGCATCCCACAGATCGGCGACAAGTTTGCCTCCCGTCACGG-ACAGAAGGGAACGTGTGG 7016551 Query 33624 CATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGT 33683 || ||| ||| |||||||| ||||| ||| || ||| ||| || | | Sbjct 7016552 GATCCAGTATCGGCAGGAAGACATGCCCTTCACCTGCGAGGGACTGGCCCCCGATATCAT 7016611 Query 33684 CATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 |||||| || ||||| ||||||| || ||||| Sbjct 7016612 CATCAATCCCCATGCCATCCCCTCTCGTATGAC 7016644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356177862577714