Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1635 491 6e-134 seq1592 136 5e-27 >seq1635 Length=10282868 Score = 491 bits (544), Expect = 6e-134 Identities = 1252/1888 (66%), Gaps = 32/1888 (2%) Strand=Plus/Minus Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844 || || |||||| | ||||| || || | || || | ||| || |||| ||| || Sbjct 1117714 TTGTTTCTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATA 1117655 Query 70845 CATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 70904 ||| || |||||||| || |||| | ||||||| || || | ||| || Sbjct 1117654 CATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTA 1117595 Query 70905 GCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTC 70964 | | || || |||| ||||| ||| | |||||||||||||| || || || || || || Sbjct 1117594 GTTGGGCTCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATC 1117535 Query 70965 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCT 71023 ||||||||||| || | | ||| || ||||||||| | ||||||||||| |||| Sbjct 1117534 AGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG 1117475 Query 71024 TAATATCTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCAA-TAATCCTA 71079 || | || |||| |||| || ||| ||||||| || || ||| || | || || Sbjct 1117474 -AACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTA 1117417 Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| ||||| |||| |||||| | || |||||| | || | | |||| |||| Sbjct 1117416 TTTTTCATCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTG 1117357 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || ||||||||||| ||||| ||||||| | || |||||||| ||||||| ||||| Sbjct 1117356 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCG 1117297 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||| || ||||| |||| |||||| ||||| ||||| || ||||| || || || || Sbjct 1117296 AATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAAC 1117237 Query 71260 AGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 | ||| |||| || || | || | || || || || ||||| ||| || Sbjct 1117236 AACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGG 1117177 Query 71320 TCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA--TC 71377 | || ||| || || || || | | || || Sbjct 1117176 TTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCT--CACAGGACTTC 1117119 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || |||| || || ||| ||| || ||| || ||||||||||| || || | || | Sbjct 1117118 CTTCATAGGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCC 1117059 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 || ||||||| ||||| || || | | || | | ||||| ||| ||| | | Sbjct 1117058 CAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGG 1116999 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 || || | | ||| || ||||| ||||| |||||||| || |||||||| || | | Sbjct 1116998 GAAAACGCATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGAT 1116939 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | || ||| || | | |||||||| | || ||||| || || ||||||||||| | Sbjct 1116938 GCCTTAAATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGT 1116879 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCC 71674 | |||||| || | | |||| || || |||| ||| |||||| | | | Sbjct 1116878 TAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTT 1116819 Query 71675 CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | | |||| |||| ||||| || | || || | ||| || || || ||||||| || Sbjct 1116818 CTGGTGTTACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAG 1116759 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | || | | |||||| || || | |||||| || || ||||| || | ||||| Sbjct 1116758 GTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTT 1116699 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||||||| |||||| | ||||| | ||||||| |||| || | || ||||||| || | Sbjct 1116698 GTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCA 1116639 Query 71855 TCTGAGATTCTATAATCGCTTTCCA-GACGACTCG--AGCCTTTATTATATTCTTGTATC 71911 || ||||||||||| || ||| | | || | || | || |||| | | Sbjct 1116638 CTTGCGATTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTC--GCACG 1116581 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 || |||| || |||| ||| | ||| || | || |||||| ||| | | Sbjct 1116580 TC-CTTCTTGCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAA 1116522 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 |||||||||| || ||||||||||| ||||| | ||| | | || ||||||| Sbjct 1116521 GGCCAGGACATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCA 1116462 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | || |||||||||||||| ||||| ||| ||||| | | ||| | || || |||| Sbjct 1116461 TGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTC 1116402 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | || || |||| || || | ||| | | || ||| |||||||| || || || || | Sbjct 1116401 CAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAA 1116342 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || || | ||| ||||||||||| | |||| || |||||| Sbjct 1116341 TAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAA 1116282 Query 72212 AAACTCTCAACATTGGAA-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 ||||||| | |||||||| |||| ||||| || | ||| || || || | || | | Sbjct 1116281 AAACTCTTAGCATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATGGATGTG 1116223 Query 72271 CCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || | |||||||| | || ||| || || ||||| ||||| || || || | Sbjct 1116222 CCTTTAGCACGAATGCAATGAACATT--AAGTCCAATTCCACCTGCTGACTTGGAAATCA 1116165 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAA 72385 ||| ||| ||| | | | | | || || || || ||| || ||| ||| || Sbjct 1116164 GTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA 1116107 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 |||||||| |||| ||| | ||| | ||| | ||| ||| | || || || | Sbjct 1116106 -AAGAAAACATGAGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGG 1116048 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | |||||||| || |||||||||||| ||||| || || | || | || ||||| Sbjct 1116047 CATGCGTAAAATATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGT 1115988 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 | ||| || || | ||||| ||||| | ||| || || || | ||| | || || Sbjct 1115987 CTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCC 1115928 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 |||||| || | | ||||| || | || ||||| ||||||||||| || || Sbjct 1115927 CATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAA 1115868 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATT 72653 | ||||| || ||||||||| | || || Sbjct 1115867 AATCTCGGTCATAAATAATAGCGGAGTT 1115840 >seq1592 Length=614636 Score = 136 bits (150), Expect = 5e-27 Identities = 292/434 (67%), Gaps = 3/434 (1%) Strand=Plus/Plus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || |||||||| ||||| || || | || | |||||||| || || || ||| Sbjct 387681 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 387740 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || |||||||| || || ||||| ||| |||||||||| Sbjct 387741 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 387800 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTGTCATG--TATC 42244 ||||| || |||||||||||||||| | ||| || | || | | || | |||| Sbjct 387801 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 387860 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 387861 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 387920 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 | |||| || | || | || || || || | | || ||||| || Sbjct 387921 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 387980 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || | || || ||||| ||||| || |||||||| || | ||||| || | ||| Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || || ||| || || | ||||| ||||| || || ||||| ||| || || Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 42485 AACGCCAATACATG 42498 || |||| ||||| Sbjct 388101 AAGGCCAGCACATG 388114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671031498936880