Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1635 122 9e-23 seq1619 91.5 1e-13 >seq1635 Length=10282868 Score = 122 bits (134), Expect = 9e-23 Identities = 934/1490 (63%), Gaps = 49/1490 (3%) Strand=Plus/Minus Query 156142 GACGGTAAATTGC--TGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTT 156199 ||| |||||||| |||| ||||| || || |||||| ||||| ||||| |||||| Sbjct 1117702 GACAGTAAATTGTATTGCG--TTGGCGGCAGGTTTTGTGCGTAAATAATACATTCCGGTT 1117645 Query 156200 TTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTT- 156258 || || || ||||| | | | || | || | || ||| | ||| ||| | Sbjct 1117644 TTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTC-CGTAGTTGGGCTC 1117586 Query 156259 TGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCAT 156318 ||| | || || || || || ||||||||||| |||||||| || || || || ||||| Sbjct 1117585 TGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCAT 1117526 Query 156319 TTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTT 156378 || ||| | ||||| | || |||||||||| | || | || || | Sbjct 1117525 TTTAATTGTGGATTTTAC--TG-------AAATTTCCCATACAGTTTTATAAAGATCGCG 1117475 Query 156379 TAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGATTGTTTT 156438 | || | |||||| | | ||| || || || ||| | | || ||| | || Sbjct 1117474 AACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATT 1117415 Query 156439 TCGCATACTAT--TTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTG 156496 | ||| || | ||| || | |||| ||| ||| | || | | ||| Sbjct 1117414 TTTCATCTCATCATCCCATA-AG-TCCAATTCTGTTAAATCCCTCAATAAATGATGATTG 1117357 Query 156497 ACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCA 156556 || ||||||||||| || || || || |||||| | | | ||| || | | ||||| Sbjct 1117356 ACCACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCG 1117297 Query 156557 AATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGC 156616 ||||| ||||| || | |||||||| || | || || ||||| ||| || | | Sbjct 1117296 AATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAAC 1117237 Query 156617 AATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAA-CTGTGACCAGTCCCATAA 156675 || ||||| | | ||||| |||| || | | |||| || || ||| ||||||| Sbjct 1117236 AACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTG-CCAATCCCATAG 1117178 Query 156676 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 156735 || || ||| ||||| ||| ||||| | ||||| | |||| | || || Sbjct 1117177 GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACTTCC 1117118 Query 156736 GGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCGAGCGCA 156793 || | || ||| ||| | || | || ||||| |||| || || || || Sbjct 1117117 TTCATAGGTTTCATATA-CTC-CAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCC 1117060 Query 156794 GCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTAC 156853 || ||| | |||||| ||||||| || || ||| |||| | ||||| | || Sbjct 1117059 CCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAG 1117000 Query 156854 GGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGA 156913 || | |||| | || || || || || |||||||||| || || ||||| |||||| Sbjct 1116999 GGAAAACGCATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGA 1116940 Query 156914 TGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTA 156973 || | | ||| || || || || | | ||||| | ||| || |||||||| Sbjct 1116939 TGCCTTAAATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTG 1116880 Query 156974 TTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCA 157033 || | | | | | ||| |||| || | ||| || |||||| | || | Sbjct 1116879 TTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTT 1116820 Query 157034 T-TATTGATAT--ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCG 157090 | | || || | | || | || || || |||| ||| || || || || || Sbjct 1116819 TCTGGTGTTACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCA 1116760 Query 157091 GGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTA 157150 || || | || | || ||||| | ||| ||||| |||||||| || || ||| Sbjct 1116759 GGTGCTGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTT 1116700 Query 157151 CTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCG 157210 ||||||||| || | || || | ||||| | | |||||| || | || || || Sbjct 1116699 TGTTGATTGCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCC 1116640 Query 157211 GCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATT---TGCTCG---CGA 157264 |||| |||||| || | ||| | | |||| | || ||| || Sbjct 1116639 ACTTGCGATTCTATAATAGCAAACCATAAAG----CCTGGGCTTCCACTGTTCGATTCGC 1116584 Query 157265 AACTGGCCTTTATCCTCGTAATGTTTGTACCAG---TATTCAAAGTCATCACCATACGTA 157321 | | |||| | ||| || |||| || | |||||| | || || | | Sbjct 1116583 ACGT--CCTTCTTGCTCATA---TTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACA 1116529 Query 157322 TCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACG 157381 || | || |||||| | | |||||||| || ||||| | | ||| | ||||| Sbjct 1116528 TCTTGAAGGCCAGGACATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACA 1116469 Query 157382 CGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCT 157441 |||||||| || | ||| |||| ||||| ||||| | | |||||| ||| || | ||| Sbjct 1116468 CGTTTCATGAAAAGATCAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCT 1116409 Query 157442 TCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCA 157501 || | ||| |||||| | || ||||| || | || || ||||||| || || Sbjct 1116408 TCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCT 1116349 Query 157502 ACGTACACTGCTTGGGCTCCTTTTCGCTTGCCACCT---TGATCCACGTGACGCACCATA 157558 | || | || ||| || || || |||||| ||||| || | || ||| | Sbjct 1116348 AAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACA 1116289 Query 157559 TTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 ||||||||||||| |||||||| | | ||| | | || |||||||| Sbjct 1116288 TTATTAAAAACTCTTAGCATTGGAACTAATCCATTCGACGTACCGTTCGT 1116239 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | || || || || || ||||| ||||| || ||| | ||||| Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 1470275 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || ||||| |||||| ||| || ||||| ||||| || ||||||||||| Sbjct 1470276 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1470335 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | |||||| Sbjct 1470336 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 1470395 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190 || || | || ||||| || || ||||| | ||| Sbjct 1470396 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 1470430 >seq1619 Length=1930428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || || | || ||||| || || |||||||||||| Sbjct 106955 GCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGA 106896 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || |||||| ||| |||||||| || || Sbjct 106895 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 106836 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || | | || | ||||||| ||| || || Sbjct 106835 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 106776 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 106775 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 106728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || || | || ||||| || || |||||||||||| Sbjct 108989 GCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGA 108930 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || |||||| ||| |||||||| || || Sbjct 108929 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 108870 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || | | || | ||||||| ||| || || Sbjct 108869 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 108810 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 108809 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 108762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506933036864160