Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1592 255 9e-63 seq1615 221 2e-52 seq1626 203 5e-47 seq1612 91.5 2e-13 >seq1592 Length=614636 Score = 255 bits (282), Expect = 9e-63 Identities = 578/862 (67%), Gaps = 38/862 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | |||||||| ||||| || |||||||| ||||| || |||||| | || | Sbjct 388212 AGGCGGAAGCCTCCTTCTGGACCGTGGAAGAGGTGGATCTATCGAAGGACGCGACGGACT 388153 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| | ||||| | ||||| | ||||| || || | |||||||||| | Sbjct 388152 GGG---CCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCG 388096 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | ||| || || || || ||||| ||| || | || || ||| ||| || | Sbjct 388095 CTGCCTCGGACGGCATTGTTAACGAGAATTTGGTCGAGCGCTTTAGTCAGGAGGTGCAGA 388036 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | |||||| ||||| ||||| ||||| || || ||||| |||||||| || | Sbjct 388035 TCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGA 387976 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCT 125334 ||||| || ||||||| ||||| || || ||||| || | || || || Sbjct 387975 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTC- 387917 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 || || || || || ||||| || ||||| ||||| | |||| || Sbjct 387916 --AATGCTATTGAGACCATGCCGGCT----GTAAAGCGCAAGGCGGACTGGGCCATGTCC 387863 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 ||||| || | || || | || ||||| | | | || || || ||||| Sbjct 387862 TGGAT--ATC-CTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTG 387806 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || ||||||||| || || ||||| | ||||||||||| |||||||| || ||| Sbjct 387805 GAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTC 387746 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | |||||| | || || || ||||| || || ||||| ||| Sbjct 387745 ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGAC 387686 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC---AGCGATGAA 125624 ||||| | || ||| || || |||| ||||||| | |||| || Sbjct 387685 TTTGCGGTGCTCATGTATC---ACCATCT--------AGTGCAGCGGCCCAAGCGG-GAG 387638 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||||| | || | | ||||| ||| || || || ||||| || || ||| || Sbjct 387637 CGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCC 387578 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || || |||| |||||||||||||||| || |||| | ||||||| ||||| ||| Sbjct 387577 CTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTG 387518 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || ||||| || || ||| | || | ||||| |||||| | |||||||| || Sbjct 387517 GCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTC 387458 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 |||||||| | || || || || || ||||| ||||| || ||||||||||| | Sbjct 387457 AATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCC 387398 Query 125865 GAGTACAAACGCTACGGTGTCG 125886 |||||| | ||| ||||||| Sbjct 387397 GAGTACCAGCGCATGGGTGTCG 387376 >seq1615 Length=1645244 Score = 221 bits (244), Expect = 2e-52 Identities = 392/570 (69%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| |||||||||| ||||| || || || | | || |||||||| || |||||| Sbjct 498934 TTGCGGAAAAAGATGACGCCGGCGCGTGGTCCGCGCAAGGTTTTGTGCGTGGTTGTGGTC 498875 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| |||| ||||| || ||| | | |||| || || || | Sbjct 498874 ACAATGTCGGCGTACTGGAAGGGCGATGGTATGTGACCGGCAGCAACCAGACCTGCCACA 498815 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||||||||| || ||| ||| | | ||| |||| ||||| |||| Sbjct 498814 TGAGCCATATCGGCCATTAGGTAGGCGCCCACATCGTCGCAGATCTGACGGAAGCGTCCG 498755 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | |||| ||||| | ||||||| ||||| | | || ||||| Sbjct 498754 TAGTCGAGCAGGCGAGAGTAGCACGAGATGCCGGCGATGATGATCTGCGGCTTGAAGGCC 498695 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| |||||| || ||| | ||||| | | || ||| || | |||||||||| Sbjct 498694 TTGGCCGCCTCGGCCAGCTTGTCGTAGTCAATAATGCCCGTCACGGGGTTCACCTTGTAC 498635 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGT----------TGCGGAATCCG 127449 |||||||| ||||| |||| || || || || | ||| || ||| ||| Sbjct 498634 GGCATGCTCTCGAAGAAGATCGAGGTGGCCGAGATCCGTTTGGTGGCCGTGAAGAAGCCG 498575 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 |||||||| || || || ||||||||||| || |||||||| | ||||||| | | Sbjct 498574 TGCGTCAGATGACCGCCATCGGGCAGATCCAGGCCCATGATGCGGTCGTGCGGACGACAG 498515 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || || |||| | |||||| ||||||||||| || || ||| ||| ||| Sbjct 498514 ACGCCCACATAGGCGGCCATATTGGCCGGAGAGCCCGAGTATGGCTGGACATTCACGCCC 498455 Query 127570 CATTCGGACTCGTTCAAATTGAA-CGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | |||||||| |||||| |||| | | |||| ||| || ||||| ||||| Sbjct 498454 CACACCTCCTCGTTCAGATTGAATAGCTC-ACGGCCGCGCTTCTGGGCCAGCAGCTCGAT 498396 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||| || || |||||||| || |||||||| Sbjct 498395 GCGGTCAATGAACTCGTTGCCGCCATAGTA 498366 >seq1626 Length=3432795 Score = 203 bits (224), Expect = 5e-47 Identities = 376/545 (69%), Gaps = 10/545 (2%) Strand=Plus/Plus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| ||||| || || || |||||| | |||| || || | |||| || Sbjct 3219525 GGGAGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGCCACTTTGGTGCCGAATATGG-GA 3219583 Query 70126 CT-GCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 || |||| ||||| || |||| | || ||||||| | ||| | |||||||| Sbjct 3219584 CTTGCGACGATGACTACAGCGGCAAGGGCATCGACCAATTGC-GCCAAGTAATTGACACC 3219642 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 ||| | ||||| | ||| | ||||| | |||| |||||||||| || | Sbjct 3219643 ATCAGGCATAATCCGTCCGATCGTCGGATCATCATGTCTGCATGGAATCCGCTGGACATA 3219702 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA---CGAT 70297 | | |||||||||| || || || || ||| |||| ||||| ||| ||| | | Sbjct 3219703 CCCAAAATGGCACTTCCGCCCTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGC 3219762 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || | |||| ||| |||||||| | || |||||||||||||| || || || || Sbjct 3219763 GGAGAGCTGTCGTGCCAGCTGTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTC 3219822 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 ||||| || ||| | || |||| ||||||| || || | || ||| |||| || Sbjct 3219823 AACATCGCCTCCTACGCCCTGCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACG 3219882 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477 ||| || | |||||||| ||||||||||| |||||| | || || | || ||| | Sbjct 3219883 GGCGACTTTATCCACACCATGGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTG 3219942 Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537 |||| ||| || |||| ||||| | || ||||| |||||| | | || | ||| Sbjct 3219943 AAGGAGCAGCTGAAACGCAAGCCGCGGCCGTTTCCAAAGCTGAACATCAAGCGACAGGTT 3220002 Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597 || || ||||| |||| ||||||||| || || | |||||||| ||||||||| Sbjct 3220003 GAGAACATTGAAGATTTTCGGTACGAAGACTTCGAGATCATCGGTTACGAGCCATACCCT 3220062 Query 70598 AAGAT 70602 ||||| Sbjct 3220063 AAGAT 3220067 >seq1612 Length=1556852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || || |||| ||||||||||| || | || || || || || |||||| Sbjct 873795 TGGCCGGTGCAGAATATCATCTACACGGCCACCCTGCCCTCGGCTCTGACGGGGGCCGAT 873854 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || |||| || || | ||||||||||||||| | || | || || ||||| | ||| Sbjct 873855 GTGGCCATTTTTGCCTCATGCTTTGCCTACATTTCGGACATATCCACGCTGGAGCAGCGC 873914 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | || ||| ||| ||||| | || || ||||| | ||||| || || ||||| Sbjct 873915 ACCATCCGGGTGACCATATTGGACGTGGTGTATCTGAGTGCCATGCCCACGGGCGTGGCA 873974 Query 50315 ATCGG 50319 |||| Sbjct 873975 CTCGG 873979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740940278524880