Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1635 111 1e-19 seq3819 86.0 5e-12 >seq1635 Length=10282868 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| | ||| || || || || ||||| ||||| || ||| | ||||| Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 1470275 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||||||| | |||||||| ||||| || ||||||||||||||||| Sbjct 1470276 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1470335 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| |||| |||||||| ||| || || | || ||||| || Sbjct 1470336 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 1470395 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| || ||||| Sbjct 1470396 CCCGTTAGGGTCTTTACAAAGATCTGCAT 1470424 >seq3819 Length=1025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || || |||||||| || ||| | | | ||||| Sbjct 410 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCC 351 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | ||| || ||||| || ||||| || ||||| Sbjct 350 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 291 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || ||||| || | ||| || || | |||||| ||||| Sbjct 290 ATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACCTCCAGGGTAATAGTTTTT 231 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || |||||||||||| Sbjct 230 CCAGTCAGAGTCTTCACGAAAATTTGCATA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362122532310558