Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1616 98.7 8e-16 >seq1616 Length=1872136 Score = 98.7 bits (108), Expect = 8e-16 Identities = 220/324 (68%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 20956 CCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAAG 21015 |||||||| | ||| |||| | ||||| || |||||| ||| ||| | | Sbjct 560660 CCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTTAGCTCGTGACCACCCTTG 560601 Query 21016 CCGAGGTCATC-GCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACC 21074 || | |||||| ||| || | ||| || |||| | | || || | |||||| | ||| Sbjct 560600 CCCAAGTCATCAGCG-TCGGCGTGAACGACCACGGTGCGTCCTATGATGCTGTCGGCACC 560542 Query 21075 AAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGA 21134 |||| | ||| |||| | ||| ||| | ||| | || || || || || | Sbjct 560541 GAACAGCGTGATCTTCGAGTCGGTGATGCTGACGGCCGTGGG-GCTGT-CA-CCGGCCGC 560485 Query 21135 GCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTG 21194 ||| |||||||| ||||| | ||| || | || || ||| || ||||| | | Sbjct 560484 CTGGATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCACCGTGCTCCTT 560425 Query 21195 GTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTC 21254 || | ||||||||||| ||||| ||| ||||||||||| || |||| |||||||| Sbjct 560424 GTTCCGGGGGTTAAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTGTCCCCGAACTC 560365 Query 21255 GTGAACGTGAAAGCCGTGCAGTCC 21278 ||| || || || ||||||||||| Sbjct 560364 GTGCACATGGAATCCGTGCAGTCC 560341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414507934644172