Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3819 95.1 8e-15 seq1619 86.0 4e-12 seq1635 84.2 1e-11 >seq3819 Length=1025 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||| | |||||||| || || || ||||| || || | | || | Sbjct 416 CGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCA 357 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||| |||||||| | ||| || || || || Sbjct 356 TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 297 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| ||||| |||| || ||||| || || Sbjct 296 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACCTCCAGGGTAATA 237 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || ||||| || |||||||||||||| Sbjct 236 GTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 202 >seq1619 Length=1930428 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || ||||| || || || |||||||| |||||| | || ||| || Sbjct 106478 CACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTC 106419 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276 || ||||| || || || ||||| ||||| || | ||| ||||| || || || Sbjct 106418 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 106359 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || | | || ||||| ||| | || || || || || || Sbjct 106358 GATCTTAGCC---TTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 106302 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || ||||| || |||||| Sbjct 106301 CTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||||||||| || ||||| ||||| || |||||||| |||||| | || ||| || Sbjct 108515 CACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTC 108456 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--- 33276 || ||||| || || || ||||| ||||| || | ||| ||||| || || || Sbjct 108455 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 108396 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | | ||| || || | | || ||||| ||| | || || || || || || Sbjct 108395 GATCTTAGCC---TTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGT 108339 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || ||||| || |||||| Sbjct 108338 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 108305 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 || || | |||||||||||| || ||||| || || || |||||||| || ||| | || Sbjct 108751 AAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTACGT 108692 Query 33212 TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCT 33271 ||| |||| ||||| || || || ||||| ||||| || | ||| ||||| || Sbjct 108691 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 108632 Query 33272 TTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGA 33328 || || | | | ||| || || | | || ||||| ||| | || || || Sbjct 108631 TTGTCCTGGATCTTAGCC---TTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGG 108575 Query 33329 GTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || ||||| || ||||| || |||||| Sbjct 108574 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 >seq1635 Length=10282868 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216 || |||||||| || ||||| || || || || |||||||||| | ||| | || Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACA----GTGTTCGGCCATC 1470271 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||||||||| ||| || || ||||| || || || | || || |||||||| || Sbjct 1470272 TTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC 1470331 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || ||| || || || |||| || || |||||||| || Sbjct 1470332 CTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGT 1470391 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || ||||| || || ||||| || || |||||| || Sbjct 1470392 CTTGCCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 1470428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318727723060524