Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1635 181 2e-40 seq1604 116 9e-21 seq1619 105 2e-17 seq1592 89.7 1e-12 >seq1635 Length=10282868 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| |||||||| ||| || || || || |||||||| ||||| ||||| || |||| Sbjct 1470207 AGCCGAAGTACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGG 1470266 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || ||||| || || | | ||||||||| ||||| ||||||||| Sbjct 1470267 CCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCT 1470326 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| ||||| |||||||| | |||||| ||||| ||||| || || Sbjct 1470327 TTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTT 1470386 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || |||||||| |||||||| Sbjct 1470387 ATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 1470424 >seq1604 Length=992631 Score = 116 bits (128), Expect = 9e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | || || || ||||| || || Sbjct 939673 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCG 939614 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || ||||| || || ||||| ||||| || || Sbjct 939613 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 939554 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || || ||||| || || || || || ||||| | ||| Sbjct 939553 ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTT 939494 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || ||||| ||||||||||||| Sbjct 939493 TTCACAAAGATCTGCATTTTGT 939472 >seq1619 Length=1930428 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| ||||| || || || || || | ||| | ||||| || || || Sbjct 106930 TGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGC 106871 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || | | ||| ||||| || || || || || || ||||||||||| Sbjct 106870 TTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTA 106811 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || || || ||||| || || || ||||| ||||| Sbjct 106810 GCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 106751 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| Sbjct 106750 AGGGTCTTCACGAAGATCTGCAT 106728 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| ||||| || || || || || | ||| | ||||| || || || Sbjct 108964 TGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGCTGC 108905 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || | | ||| ||||| || || || || || || ||||||||||| Sbjct 108904 TTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTA 108845 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || || || ||||| || || || ||||| ||||| Sbjct 108844 GCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 108785 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| Sbjct 108784 AGGGTCTTCACGAAGATCTGCAT 108762 >seq1592 Length=614636 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| || || ||||| || |||||| || |||||| | ||||||||| Sbjct 387822 TTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGC 387763 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 ||||||| | || || ||||| || | || ||||| ||||| |||| | | |||| Sbjct 387762 TGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACG 387703 Query 269259 AAGGTTTACACTGCGACTTCGC 269280 ||||| | ||||||||||| || Sbjct 387702 AAGGTCTTCACTGCGACTTTGC 387681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151209010075304