Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3100 104 2e-17 seq1635 104 2e-17 >seq3100 Length=919 Score = 104 bits (114), Expect = 2e-17 Identities = 177/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || || ||||| || | || || || |||||||| |||| || ||| | Sbjct 396 TCCTGTTGAGCCGAAACCGGCCTCCCCACGTTCGGTGTCTTCCAGCTTGTCGACCATTAC 455 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | | |||||| | ||||| ||||| || | |||||| || | ||||| ||| || Sbjct 456 CAGTTCTGGGTAGAAGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCAC 515 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| ||||| || || || ||| || || || || || | ||||| ||||||||| Sbjct 516 CTCGAAGTCC--GTATCAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCT 573 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||||| |||||||| || || |||| || || || ||||| || || || Sbjct 574 TCGTCCACCACGCCGGCGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGA 633 Query 5477 GCTATGCGTCCGTAG 5491 || | ||| || ||| Sbjct 634 GCGACGCGACCATAG 648 >seq1635 Length=10282868 Score = 104 bits (114), Expect = 2e-17 Identities = 177/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || || ||||| || | || || || |||||||| |||| || ||| | Sbjct 7815553 TCCTGTTGAGCCGAAACCGGCCTCCCCACGTTCGGTGTCTTCCAGCTTGTCGACCATTAC 7815494 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | | |||||| | ||||| ||||| || | |||||| || | ||||| ||| || Sbjct 7815493 CAGTTCTGGGTAGAAGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCAC 7815434 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 ||| ||||| || || || ||| || || || || || | ||||| ||||||||| Sbjct 7815433 CTCGAAGTCC--GTATCAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCT 7815376 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||||| |||||||| || || |||| || || || ||||| || || || Sbjct 7815375 TCGTCCACCACGCCGGCGCCCACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGA 7815316 Query 5477 GCTATGCGTCCGTAG 5491 || | ||| || ||| Sbjct 7815315 GCGACGCGACCATAG 7815301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447678547254560