Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3100 143 2e-29 seq1635 143 2e-29 >seq3100 Length=919 Score = 143 bits (158), Expect = 2e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 ||||||||| || | ||| || || || || || ||| |||||||| || | | Sbjct 474 GCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTATCAGA 533 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | |||||| || || || |||| ||||||||||||||| |||| | |||||| ||||| Sbjct 534 GTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGGCGCC 593 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| || ||||||| ||| || |||||||| ||||| ||||| ||||| || ||| | || Sbjct 594 CACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGGAGCC 653 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||| || | ||||||||| || Sbjct 654 CTCCGGAACTTGAACCTGCAGGTCGGT 680 >seq1635 Length=10282868 Score = 143 bits (158), Expect = 2e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCC 5640 ||||||||| || | ||| || || || || || ||| |||||||| || | | Sbjct 7815475 GCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTATCAGA 7815416 Query 5641 GAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | |||||| || || || |||| ||||||||||||||| |||| | |||||| ||||| Sbjct 7815415 GTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGGCGCC 7815356 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| || ||||||| ||| || |||||||| ||||| ||||| ||||| || ||| | || Sbjct 7815355 CACATCAATGAAGTTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGGAGCC 7815296 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || |||| || | ||||||||| || Sbjct 7815295 CTCCGGAACTTGAACCTGCAGGTCGGT 7815269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429987112344656