Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1636 125 4e-24 seq1634 116 2e-21 seq1563 114 7e-21 seq1621 104 1e-17 >seq1636 Length=11822988 Score = 125 bits (138), Expect = 4e-24 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 10566182 AAAAAATCAGTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 10566241 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG-TCGACGA 11537 ||||| ||||||||||||||||||||| | ||||| Sbjct 10566242 GCTCTAACCAACTGAGCTAATGGGCCGCTGGACGA 10566276 >seq1634 Length=9036312 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| || |||||||||| |||||||||| |||||||||||||||||| Sbjct 8071632 AATAAAAAATGTAAACTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 8071573 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 8071572 CACGACGCTCTAACCAACTGAGCTAATGGGCC 8071541 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8853203 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8853262 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 8853263 TGAGCTAATGGGCC 8853276 Score = 111 bits (122), Expect = 8e-20 Identities = 90/111 (81%), Gaps = 9/111 (8%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAAT---------TGGCCCATGAAAGGATCGAACCT 11478 |||| ||||| |||| |||||| ||| |||||||||| |||||||||| Sbjct 8066221 GAAAAATAGATTTAAAAAAAAAGAAAAAAGTAGTTTCTGGCCCATGAGGGGATCGAACCC 8066162 Query 11479 TCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 8066161 GCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 8066111 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 8065552 AAAAAGTCATCATGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 8065611 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 8065612 GCTCTAACCAGCTGAGCTAATGGGCC 8065637 >seq1563 Length=267513 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 77366 AACAAAAAATATTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 77307 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 77306 ACGACGCTCTAACCAACTGAGCTAATGGGCC 77276 Score = 114 bits (126), Expect = 7e-21 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 80184 AAAAATAAAAAGTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 80125 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 80124 ACGCTCTAACCAACTGAGCTAATGGGCC 80097 Score = 100 bits (110), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||| ||| || | | |||||| | |||||||| |||||||||| || |||| Sbjct 77039 AAATATTGAAAAAA-AGAGGATCAAACTCTGGCCCATGGGGGGATCGAACCCGCGGCCTT 76981 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||| ||||||||||||||| Sbjct 76980 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 76938 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 77549 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 77608 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 77609 TGAGCTAATGGGCC 77622 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 79953 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 79894 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 79893 TGAGCTAATGGGCC 79880 >seq1621 Length=2181545 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| | |||||||| |||||||||| || ||||||||||||||||||||| Sbjct 1526991 AAAAAATCACCT-GGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 1526933 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 1526932 GCTCTAACCAGCTGAGCTAATGGGCC 1526907 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261450286269688