Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12331 172 9e-39 seq5834 172 9e-39 seq1636 172 9e-39 seq395 172 9e-39 seq1073 163 4e-36 seq8003 109 9e-20 >seq12331 Length=5016 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 4805 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 4746 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 4745 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 4686 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 4685 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 4626 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 4625 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 4566 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 4565 CCGCACGCTGTACGGTTTCGGCGGTTAA 4538 >seq5834 Length=1315 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 543 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 484 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 483 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 424 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 423 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 364 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 363 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 304 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 303 CCGCACGCTGTACGGTTTCGGCGGTTAA 276 >seq1636 Length=11822988 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 3261503 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 3261444 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 3261443 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 3261384 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 3261383 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 3261324 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 3261323 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 3261264 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 3261263 CCGCACGCTGTACGGTTTCGGCGGTTAA 3261236 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 3266560 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 3266501 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 3266500 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 3266441 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 3266440 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 3266381 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 3266380 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 3266321 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 3266320 CCGCACGCTGTACGGTTTCGGCGGTTAA 3266293 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 3277090 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 3277031 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 3277030 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 3276971 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 3276970 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 3276911 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 3276910 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 3276851 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 3276850 CCGCACGCTGTACGGTTTCGGCGGTTAA 3276823 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 3283822 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 3283763 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 3283762 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 3283703 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 3283702 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 3283643 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 3283642 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 3283583 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 3283582 CCGCACGCTGTACGGTTTCGGCGGTTAA 3283555 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 3288909 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 3288850 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 3288849 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 3288790 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 3288789 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 3288730 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 3288729 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 3288670 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 3288669 CCGCACGCTGTACGGTTTCGGCGGTTAA 3288642 Score = 116 bits (128), Expect = 6e-22 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| | |||| || ||||||||||| ||||||||||||||||| || Sbjct 9615739 GCCAAACGCCATCGCA-AGGTCTTGCGTGATAACATCCAGGGAATCACCAAGCCAGCCAT 9615797 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||| || ||||| |||||| | || || ||| |||| ||||| | Sbjct 9615798 TCGTCGTCTGGCCCGTCGCGGCGGAGTAAAGCGTATTTCAGGCTTGATCTACGAAGAAAC 9615857 Query 16552 TCGTGATGTTTTGAAG 16567 || | ||| |||||| Sbjct 9615858 CCGAGGTGTCTTGAAG 9615873 >seq395 Length=5489 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 4848 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 4789 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 4788 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 4729 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| |||||| || ||| ||||| Sbjct 4728 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGATGCCGTCACCTACACCGA 4669 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 4668 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 4609 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 4608 CCGCACGCTGTACGGTTTCGGCGGTTAA 4581 >seq1073 Length=11006 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 10307 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 10248 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 10247 CAGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 10188 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || |||| | || | | | |||||||| || ||| || ||| ||||| Sbjct 10187 TCGTGGAGTGCTGAAAGTGTTTTTGGAAAACGTTATCCGTGTTGCCGTCACCTACACCGA 10128 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| ||||| |||||||| | || ||||| |||| | ||||| Sbjct 10127 ACATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTGTATGCTCTGAAGAGACAAGG 10068 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || ||||| || ||||| Sbjct 10067 CCGCACGCTGTACGGTTTCGGCGGTTAA 10040 >seq8003 Length=1661 Score = 109 bits (120), Expect = 9e-20 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 1539 CGCTAAGCGTCATCGCAAGGTTCTTCGTGATAACATCCAGGGTATCACGAAGCCCGCTAT 1598 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | ||||||||||| || || || ||| |||| ||| | |||| || || | Sbjct 1599 CCGCCGTTTAGCTCGTCGTGGCGGTGTAAAACGTATCTCGGGACTCATCTACGAGGAAAC 1658 Query 16552 TCG 16554 ||| Sbjct 1659 TCG 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063462126734