Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1635 535 5e-147 seq1592 147 3e-30 >seq1635 Length=10282868 Score = 535 bits (592), Expect = 5e-147 Identities = 1253/1876 (67%), Gaps = 20/1876 (1%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||| | || ||||| || | || || ||||| || |||| ||| |||||||| Sbjct 1117708 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCC 1117649 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 1117648 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 1117589 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 1117588 CTCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 1117529 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 1117528 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 1117470 Query 62224 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 62279 || |||| |||| || ||| ||||||| || || ||| | | || |||| || Sbjct 1117469 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 1117411 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 |||||||||| |||||| | || |||||| | || | | ||| |||| || ||| Sbjct 1117410 ATCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 1117351 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 |||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 1117350 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 1117291 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 1117290 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 1117231 Query 62460 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 || |||| |||| || | || | || || || || ||||| ||| || | || Sbjct 1117230 TTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTT 1117171 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || ||||||||| || || || | | || |||| |||| Sbjct 1117170 GGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACT-TCCTTCATA 1117112 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 || || ||| ||| | ||||| ||||||||||| || || | || || |||| Sbjct 1117111 GGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATA 1117052 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 ||| ||||| || || | | |||| | ||||| ||| ||| | ||| || Sbjct 1117051 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 1116992 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | | ||| || ||||| ||||| ||||||||||| |||||||| || | ||| || Sbjct 1116991 CATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAA 1116932 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 ||| || | | |||||||| | || ||||| || || ||||||||||| || ||||| Sbjct 1116931 ATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 62819 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---T 62875 | || ||| |||| || || || | ||| |||||| | ||| | Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGGTGT 1116812 Query 62876 TACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 ||| |||||||||| || | || || | ||| || || || ||||||| || | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | | || || || || | |||||| || || || || || | |||||||||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||| | ||||| | ||||||| |||| ||| |||| ||||||| || | || || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTC 63114 ||||||||| || ||| | | | || | | | | |||| | | ||||| || Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-CTT 1116573 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 || ||| ||| | ||| || | || |||||||||| | | ||||||| Sbjct 1116572 GCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 1116513 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| || ||||||||||||||||| | | | ||| || |||||||| || |||| Sbjct 1116512 ATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGAT 1116453 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||||||||| ||||| ||| ||||| | | ||| | ||| || ||||| || || Sbjct 1116452 CAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTC 1116393 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 1116392 TTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGG 1116333 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 | ||||| | ||| ||||||||||| | |||| || |||||| ||||||| | Sbjct 1116332 CACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAAAACTCTTA 1116273 Query 63415 ACATTGGAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 |||||||| |||| || || || |||| || || || | || | | || | ||| Sbjct 1116272 GCATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATGGATGTGCCTTTAGCA 1116214 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 ||||| | || || || ||||| ||||| || || || | ||| ||| || Sbjct 1116213 CGAATGCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCAGTGCACATTGT 1116154 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGC 63591 | | | | | | ||||| || || ||| ||| |||| | | |||||||| Sbjct 1116153 TCAACTGATTTAAAAATACCTTCAATTGAATC--CGAATTCATTGTCAAAAGAAAACATG 1116096 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 |||| ||| | ||| | ||| | ||| ||| | || || || || |||||||| Sbjct 1116095 AGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAAT 1116036 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63711 || |||||| ||||| ||||| || || | || | || ||||| | |||||| | Sbjct 1116035 ATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATAC 1115976 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | | ||||| ||||| | |||||| || || | ||| | || || ||||| || | Sbjct 1115975 CAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAA 1115916 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 | ||||| || | || ||||| ||||||||||| || ||| ||||| || | Sbjct 1115915 GTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCAT 1115856 Query 63832 AAATAATAACCGAGTT 63847 |||||||| | ||||| Sbjct 1115855 AAATAATAGCGGAGTT 1115840 >seq1592 Length=614636 Score = 147 bits (162), Expect = 3e-30 Identities = 353/532 (66%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || |||||||| ||||| ||||| | || || |||||||| || || || ||| Sbjct 387681 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 387740 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || |||||||| || |||||||| || || || || ||| |||||||||| Sbjct 387741 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 387800 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 33483 ||||| || || ||||||||||||| | ||| || | || || | || | |||| Sbjct 387801 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 387860 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || ||||| || ||||| |||||| ||||| || || || ||||| || Sbjct 387861 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 387920 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 | |||| || | || | || || || || | | || ||||| || Sbjct 387921 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 387980 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || | || || ||||| ||||| || |||||||| || | ||||| || ||||| Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 || || || ||| || || ||||||| || || || || ||||| ||| || || Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || |||| ||||| ||||| || |||| || || ||| || | Sbjct 388101 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 388160 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 || || |||| ||| || |||||||| ||||| || || || || |||| Sbjct 388161 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGCCT 388212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622847232548080