Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1632 159 3e-34 seq1635 116 4e-21 seq1616 84.2 2e-11 >seq1632 Length=7162766 Score = 159 bits (176), Expect = 3e-34 Identities = 215/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTAC-GCAATGAGGGTAAAATTCACGGATA 71736 ||||| || ||||| |||| |||| ||||| || | ||||| || || ||||||| Sbjct 2591494 GATGACCTGTGGAACTCTGCCCAGCTGCAGCTGGTGCGA-GAGGGCAAGATGCACGGATT 2591436 Query 71737 CCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCT 71796 || ||||||||||||||||| || || ||||||||||| || || ||||||||||| Sbjct 2591435 TCTGCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCT 2591376 Query 71797 CGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856 ||||| | || || ||||| | ||||| || ||||| |||||||| || || || Sbjct 2591375 GGAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTA 2591316 Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGT 71916 ||| || ||||||||| |||| | || | ||||||| ||| || ||| | Sbjct 2591315 TGTGGGCTGCATGTGGTCCATTGGGGGCATACACGATATGGGCTGGAAGGAGCGTGCGAT 2591256 Query 71917 GTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 || || || |||||||| ||||| | | || ||| | ||||||||| | ||||| Sbjct 2591255 ATTCGGAAAGATTCGCTACATGAACTATCAAGGATGCAAGCGCAAGTTCGACGTGAA 2591199 >seq1635 Length=10282868 Score = 116 bits (128), Expect = 4e-21 Identities = 340/515 (66%), Gaps = 19/515 (4%) Strand=Plus/Minus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTC--TTCGTACGTACAAATTACTA 147506 ||| ||||||||||||||| | || || || | |||| ||||| || | ||| | Sbjct 1117366 ATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA--TAAATATTTGTG 1117309 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||| | || ||||| || ||||| ||||| | ||| |||||||| | ||| || ||||| Sbjct 1117308 GTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATC 1117249 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCC 147626 || | || || ||||| | | |||||| | || ||| ||| || | | Sbjct 1117248 GGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGC 1117189 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 || | ||| || |||| | | | ||| ||||| |||| | |||| || ||| Sbjct 1117188 CAATCCCATAG---GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTG 1117132 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 || |||| ||||| || || | || ||| ||| || ||| ||||| || Sbjct 1117131 CTCACAGGACTTCCTTCATAGGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAAC-- 1117074 Query 147747 TGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 | ||| || || ||| ||||||| ||||| | || | || |||||| | || | Sbjct 1117073 TAGCTTCCAGAGCCCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTT 1117014 Query 147805 CTTGGCTGTCGTAGGGCATATCC---AAAATGGCGAACGTATCCGCAAGTCCTTGAATAC 147861 ||| ||| || ||||| | | | ||||| || | || || | ||||||| || Sbjct 1117013 CTTCGCTTTCATAGGGAAAACGCATTAAAAT---TAAAGCGTCAGCTAAACCTTGAACAC 1116957 Query 147862 CGATACCGATGGGTCGGTGTCTGAAATTCGA-TGCTTGAGCGCTAGCCAACGGATAAAAA 147920 | |||||||| || || || || ||||| || | |||| || | ||| || ||| | Sbjct 1116956 CTATACCGATTGGACGATGCCTTAAATTGGACTTCTTG-GCTTCTGGCAAGGGGTAATAG 1116898 Query 147921 TTCAAGTCGATAATTTTATTGAGATTATTGGTAAC 147955 || | ||| |||||||| || ||||| |||| ||| Sbjct 1116897 TTGATGTCTATAATTTTGTTAAGATTTTTGGCAAC 1116863 >seq1616 Length=1872136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 115135 TTTTTACAAGAGAGTCCCGAGCATCTACTAAAGATCACGGGCTACATTTTGAACCTACCC 115194 ||||||||| ||| |||| || | || |||| ||| | | || ||| || Sbjct 560278 TTTTTACAACAGACCAGCGAGGCTCCCGTGAAAGTCACCGGCGAGGTGCTGGGCCTTGCC 560337 Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 || || |||||||||| ||||| ||||| ||||| |||| | ||||||||||| ||| Sbjct 560338 AAGGGACTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCG 560397 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCA 115300 | ||| || |||||||| ||||| || |||||||| |||| Sbjct 560398 TCCGGCCCCCACTTTAACCCCCGGAACAAGGAGCACGGTGCCCCCA 560443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585586651360