Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1635 221 3e-52 >seq1635 Length=10282868 Score = 221 bits (244), Expect = 3e-52 Identities = 719/1110 (65%), Gaps = 10/1110 (1%) Strand=Plus/Plus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| |||| ||||||| | ||| ||||| ||| | || ||||| | |||| Sbjct 1115879 TATTTT-GGATTTAAGACGCTCGAGCGTTCCTATCTACTTAAGATAAATGGGAAAATTGC 1115937 Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 ||||| || || || ||| | ||||| || ||| ||||||| ||| | ||| |||| Sbjct 1115938 AGAACGTCCACAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTGA 1115997 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 ||| || | ||||| || || || || || || || ||||| ||| ||||||| Sbjct 1115998 TGCGGCAGTGGAAACTTACAACCTACTGTCTGAACGATATTTTACGCATGCCTCGCCAAC 1116057 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||||| ||| | || || |||| || || |||||| | | |||||| Sbjct 1116058 GCTTTTTGCTGCTGCAACAAATCGACCTCAATTGTCCTCATGTTTTCTTTTGACAATGAA 1116117 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||||| || || ||||| ||| | || || | | ||||| || ||||||||| Sbjct 1116118 TTCGGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGTGCACTGATTTCCAAGTC 1116177 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGC 363744 ||||| |||||||| | || || || ||||||| | || | ||| | Sbjct 1116178 AGCAGGTGGAATTGGACTTA--ATGTTCATTGCATTCGTGCTAAAGGCACATCCATATGT 1116235 Query 363745 GGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || || || ||| |||||||| | ||||| ||||| | || ||| | ||| || Sbjct 1116236 GGAACGAACGG-TACGTCGAATGGATTAGTTCCAATGCTAAGAGTTTTTAATAATGTGGC 1116294 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || ||||| || ||||| | || || |||||||| ||| | ||||| Sbjct 1116295 ACGATATGTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCC 1116354 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 ||| | ||| ||||||||||| | || ||| | |||||| |||||||| ||| Sbjct 1116355 CTGGCATTCAGATGTTTTTGAGTTTTTAGACCTCAAAAGAAACACTGGAAAAGAAGAAAA 1116414 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 | ||||||||||| || || || || ||| || |||| | ||| ||||| || || || Sbjct 1116415 CAGAGCACGTGATCTTTTTTACGCTCTATGGATTCCTGATCTTTTCATGAAACGTGTTGA 1116474 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 |||| | | | ||||| | | || ||||| ||||||| || ||| ||||| || Sbjct 1116475 GGCAAATGAAAGCTGGTCGTTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTG 1116534 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 ||| || | | || | || || | || ||||| || ||| || | || Sbjct 1116535 GGGCGAAAAATTTGAAGAGCTCTATGTCAAATATGAGCAAGAAGGACGTGCGAATCGAAC 1116594 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 | | || ||| |||||||||| || || || ||||| | ||||| || | || Sbjct 1116595 AGTGGAAGCCCAGGCTTTATGGTTTGCTATTATAGAATCGCAAGTGGAGACTGGTAACCC 1116654 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | | || ||||| || || | ||| ||| || || | |||| || || Sbjct 1116655 ATACATGCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACCAT 1116714 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | | || || ||||||| || ||| | || ||| | || || || ||| || || Sbjct 1116715 TAAATGCAGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGGTCGCTGT 1116774 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGACCA 364340 || || | || || || || || ||| |||| ||| || | ||| Sbjct 1116775 CTGCAATTTAGCTTCCATAGCACTGAACATGTTCGTAACACCAGAAAAAACGTATGATTT 1116834 Query 364341 CCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAA 364400 | | | | | || |||||| | || | | ||||| |||| |||| |||| Sbjct 1116835 CAAAAAATTAAAAGAAGTAACCAAAACTGTTGCCAAAAATCTTAACAAAATTATAGACAT 1116894 Query 364401 GAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 || ||||| || | || |||||| || || ||| | | ||||| || || ||| | Sbjct 1116895 CAACTATTACCCCTTGCCAGAAGCCAAGAAGTCCAATTTAAGGCATCGTCCAATCGGTAT 1116954 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 ||||| || || | ||||||| ||| || Sbjct 1116955 AGGTGTTCAAGGTTTAGCTGACGCTTTAAT 1116984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303139215439316