Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1635 105 6e-18 seq1628 96.9 3e-15 seq1619 91.5 1e-13 seq1604 91.5 1e-13 >seq1635 Length=10282868 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || |||| || || | || || | || ||||| | Sbjct 1470424 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 1470365 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| ||||| ||||||||||| || ||||| |||||| Sbjct 1470364 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 1470305 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTATA 24168 ||| | |||| | || ||||||||| | ||||||| | ||| || ||| | |||||| Sbjct 1470304 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG--ATTATA 1470247 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| || || || || | |||||||| Sbjct 1470246 ACATTCAGAAGGAGTCAACCTTGCATTTAGT 1470216 >seq1628 Length=3966273 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || || ||||| | ||||| || | || ||| | || |||||| || Sbjct 3671370 AAAATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 3671311 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| || ||||| || || ||| Sbjct 3671310 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 3671251 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||||||||| || || |||| | | | | ||| || Sbjct 3671250 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 3671191 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || || | || || ||| Sbjct 3671190 AACATCCAGAAGGAGTCGACCCTGCACTTGGTG 3671158 >seq1619 Length=1930428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 107850 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 107909 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 107910 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 107969 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | | |||||| ||| Sbjct 107970 CAGCGTTTGATCTTCGCCGGCAAGCAGCTAGAGGACGGACGTACCTTGTCCGATTACAAC 108029 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | ||||| ||| Sbjct 108030 ATCCAAAAGGAGTCCACCTTGCATTTGGTG 108059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 106728 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 106787 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| || ||||| || || ||||| Sbjct 106788 GACACCATCGAGAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAG 106847 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | |||||| ||| Sbjct 106848 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 106907 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 106908 ATCCAGAAGGAATCCAC 106924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 108306 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108365 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 108366 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 108425 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | |||||| ||| Sbjct 108426 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 108485 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | ||||| ||| Sbjct 108486 ATCCAAAAGGAGTCCACCTTGCATTTGGTG 108515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 108534 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108593 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 108594 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 108653 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | |||||| ||| Sbjct 108654 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTATCCGATTACAAC 108713 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||||| ||| | | ||| | ||||| Sbjct 108714 ATCCAGAAGGAGTCCACCTTGCATTTGGTGCTCCGCTTGCGCGGAGG 108760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 108762 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 108821 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| || ||||| || || ||||| Sbjct 108822 GACACCATCGAGAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAG 108881 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | |||||| ||| Sbjct 108882 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 108941 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 108942 ATCCAGAAGGAATCCAC 108958 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| |||||| || Sbjct 106269 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 106328 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 106329 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 106388 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| || || || | | | | |||||| ||| Sbjct 106389 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTACAAC 106448 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 106449 ATCCAGAAGGAGTCCACCTTGCATTTGGTG 106478 >seq1604 Length=992631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||||||||| | ||||| ||||| || ||||||||| | || ||| | || || ||| Sbjct 939472 ACAAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGC 939531 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | ||||||||| ||| | || || ||||| ||||| || || || || || | Sbjct 939532 CATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAG 939591 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 | || ||| | || || | || |||||||||||| || |||| | | | | || | Sbjct 939592 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAGGATGGCCGCACTCTTTCGGACT 939651 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | ||||| || || || || || | ||||| ||| Sbjct 939652 ACAACATCCAGAAGGAGTCGACTCTGCATTTGGTG 939686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429868730869890