Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1604 125 6e-24 seq3819 89.7 4e-13 seq1628 89.7 4e-13 seq1619 87.8 1e-12 seq1616 84.2 2e-11 >seq1604 Length=992631 Score = 125 bits (138), Expect = 6e-24 Identities = 170/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||| || |||||||| || ||||||||||| | Sbjct 939703 CCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 939644 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| ||| ||||| || | || || ||||| ||||| || Sbjct 939643 AGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 939584 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 939583 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCCA 939526 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 |||| ||||||||||||||| |||| ||||| ||||| |||||||||||||| Sbjct 939525 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 939471 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||| || |||||||| || ||||||||||| | Sbjct 940159 CCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 940100 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || |||| || ||||| ||||| || Sbjct 940099 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGGGGG 940040 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 940039 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCCA 939982 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||||||||||| ||||| ||||| || ||||| Sbjct 939981 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 939933 Score = 113 bits (124), Expect = 4e-20 Identities = 183/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 16681 AAATGTATTATTGTTTAGCCGCATTTAC-CCTCCTCGTAGCCTCAGTACCATATGCAGCG 16739 ||||||| || | |||| |||| || || || || || | ||| |||| |||||| | Sbjct 940413 AAATGTAGTAA-GATTAGGCGCAG--ACTCCGCCACGGAGACGCAGCACCAAATGCAGAG 940357 Query 16740 TGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCG 16799 | |||||||| || ||||||||||| | | || | | ||||||| || ||||| | Sbjct 940356 TCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGG 940297 Query 16800 CATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTT 16857 | | || || ||||| ||||| || | ||||| ||||| || || || ||| Sbjct 940296 CGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGC--CTT 940239 Query 16858 CACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGT 16917 ||| | | | |||||| |||||| |||| |||||||||||||||||||| || Sbjct 940238 CACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAAGGT 940179 Query 16918 TTTGACAAAAATCTGCAT 16935 ||| ||||| || ||||| Sbjct 940178 TTTCACAAAGATTTGCAT 940161 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || |||||||| || ||||||||||| | | || | | ||| Sbjct 939916 AGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 939857 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| ||||| || | ||||| ||||| Sbjct 939856 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 939797 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| |||||| |||| |||||||| Sbjct 939796 TGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGG 939739 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||||| ||||| |||||||| ||||| Sbjct 939738 TTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 939705 >seq3819 Length=1025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||| || |||||||| || ||||||||||| | Sbjct 200 CCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 141 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || |||| || ||||| ||||| || Sbjct 140 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGGGGG 81 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || |||||| | | | |||||| |||||| Sbjct 80 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGGATGGCTCCA 23 Query 16887 TTTCCACGGTGATGGTTTTTCC 16908 |||| ||||||||||||||| Sbjct 22 CCTCCAGGGTGATGGTTTTTCC 1 >seq1628 Length=3966273 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | ||| Sbjct 3671156 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 3671215 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | |||||| ||||| Sbjct 3671216 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 3671275 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 3671276 TGGATCTTAGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 3671333 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || || || |||||||| Sbjct 3671334 TCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 3671370 >seq1619 Length=1930428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| |||||||| |||| || ||| ||||| Sbjct 108061 AGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCC 108002 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || | ||||| || || || | |||||| ||||| Sbjct 108001 TCTAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 107942 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||||| Sbjct 107941 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGG 107884 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| || |||||||| Sbjct 107883 TCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 107850 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| |||||||| |||| || || ||||| Sbjct 108517 AGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCC 108458 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || | ||||| || || || | |||||| ||||| Sbjct 108457 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 108398 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||||| Sbjct 108397 TGGATCTTAGC--CTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGG 108340 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| || |||||||| Sbjct 108339 TCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 108306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || |||||||| |||| || || ||||| Sbjct 106480 AGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCC 106421 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || | ||||| || || || | |||||| ||||| Sbjct 106420 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 106361 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| || | |||||||| Sbjct 106360 TGGATCTTAGC--CTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGG 106303 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| || |||||||| Sbjct 106302 TCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 106269 >seq1616 Length=1872136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 19396 TGCACGGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCG 19455 ||||||| || |||||||||||||| || || | || |||||| |||| ||| | ||| Sbjct 560345 TGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCCGGCC 560404 Query 19456 AGCATTTTAACCCCACGCATCAA-CAGCATGGTGCCCCCGACGCCGCAGAGCGGCACGTT 19514 || ||||||||| || | ||| |||| ||||||||| || || | || ||| | Sbjct 560405 CCCACTTTAACCCC-CGGAACAAGGAGCACGGTGCCCCCACCGACGAGAACCGCCACTTG 560463 Query 19515 GGTGACCTGGGCAAC 19529 || ||| |||||||| Sbjct 560464 GGCGACTTGGGCAAC 560478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405024618665620