Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8867 140 2e-28 seq1374 136 3e-27 seq1177 136 3e-27 seq1113 136 3e-27 seq9827 131 1e-25 seq5953 131 1e-25 seq7546 129 4e-25 seq1518 113 3e-20 seq11289 104 2e-17 seq9635 98.7 7e-16 seq9535 98.7 7e-16 seq8463 98.7 7e-16 seq6441 98.7 7e-16 seq6133 98.7 7e-16 seq5654 98.7 7e-16 seq4235 98.7 7e-16 seq3932 98.7 7e-16 seq977 98.7 7e-16 seq719 98.7 7e-16 seq1604 95.1 8e-15 seq373 95.1 8e-15 >seq8867 Length=1844 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1226 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1167 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1166 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1132 >seq1374 Length=28417 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 21434 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 21375 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 21374 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 21340 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 19085 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 19026 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 19025 GGTTATATTTAG 19014 >seq1177 Length=13808 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 7162 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 7103 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7102 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7068 >seq1113 Length=11783 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 4445 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 4504 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4505 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4539 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 6694 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 6753 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 6754 GGTTATATTTAG 6765 >seq9827 Length=2092 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 765 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 824 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 825 TAATCTATTCATGCGCGTCACTAATTAGATGACGA 859 >seq5953 Length=1332 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 769 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 710 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 709 TAATCTATTCATGCGCGTCACTAATTAGATGACGA 675 >seq7546 Length=1579 Score = 129 bits (142), Expect = 4e-25 Identities = 87/96 (91%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGG-CTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 |||||||||||||||| |||||||||||||||||||||||||||| | ||||||| Sbjct 778 AAGCCCGTTCCCTTGGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCG 719 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 718 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 683 >seq1518 Length=115424 Score = 113 bits (124), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || || || ||||| ||||||||| || |||||| ||||| || | || Sbjct 47152 AATGAACGGTTTATTGTTAATGGATCGCATGACGTCAACAAGCTTCAGGATTTGTTGGAT 47211 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||| |||||||| |||| | |||||||||||||| ||||| | || | Sbjct 47212 GGCTTCATTCGAAAGTTTGTTTTGTGCCCTGAATGCGATAACCCAGAGACTAATCTGACC 47271 Query 6495 GTGTCTACCAAGAGAA--ACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552 || || | |||| ||| | || ||||| ||| |||||| || ||||| | |||||| Sbjct 47272 GTATC-AGCAAG-GAACCAGACAATCTCGCAGTCCTGCAAGGCATGCGGCTTCCATGGTC 47329 Query 6553 AGCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||| | | |||||| | ||||| ||||| |||| ||||| ||| Sbjct 47330 TGCTTAAGGTGAACCACAAAGTGAACACATTCATTGTGAAAAATCCACCA 47379 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || |||| |||| | || || || || || ||||||||| Sbjct 45855 ATGGCCACCGTCAACGTTAACCGTAGTGTGACAGATATCTTTTATCGATATAAAATGCCG 45914 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||| | || ||||| || || || || ||||| || || || || | || || | Sbjct 45915 CG--TCTTCAAGCAAAGGTAGAAGGAAAAGGCAACGGCATCAAGACTGTTTTGGTTAATA 45972 Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 || ||||||| || | |||| | || || || |||||||| ||||| || || || || Sbjct 45973 TGGCTGAAGTTGC--ACGCGCTATTGGTCGTCCGGCCACCTATCCGACAAAGTACTTTGG 46030 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || |||||||| || | || ||||| || Sbjct 46031 CTGTGAGCTGGGCGCTCAAACACTTTTCGATCATAA 46066 >seq11289 Length=2834 Score = 104 bits (114), Expect = 2e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1611 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCGA 1552 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1551 GGTTATATTTAG 1540 >seq9635 Length=2034 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1455 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1396 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1395 GGTTATATTTAG 1384 >seq9535 Length=2006 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 393 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 334 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 333 GGTTATATTTAG 322 >seq8463 Length=1757 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1316 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1257 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1256 GGTTATATTTAG 1245 >seq6441 Length=1403 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1063 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1004 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1003 GGTTATATTTAG 992 >seq6133 Length=1358 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1120 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1179 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1180 GGTTATATTTAG 1191 >seq5654 Length=1287 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 390 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 449 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 450 GGTTATATTTAG 461 >seq4235 Length=1082 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 307 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 366 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 367 GGTTATATTTAG 378 >seq3932 Length=1038 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 262 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 321 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 322 GGTTATATTTAG 333 >seq977 Length=9403 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8691 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 8750 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 8751 GGTTATATTTAG 8762 >seq719 Length=7177 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 371 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 312 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 311 GGTTATATTTAG 300 >seq1604 Length=992631 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || | Sbjct 939705 TACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 939646 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||| || ||||| || || || || || || || | || Sbjct 939645 AAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGG 939586 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 939585 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 939526 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || ||||| || |||||||||||||| || |||||||| || || Sbjct 939525 CCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTA 939471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| ||||||||| ||||| |||||| || || ||||| || | Sbjct 940161 TACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 940102 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || ||||| || || || || || || || | || Sbjct 940101 AAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGGG 940042 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || |||||| |||| | || || || | Sbjct 940041 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCA 939982 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || |||||||||||||| || || ||||| Sbjct 939981 CCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 939933 >seq373 Length=5666 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5193 CTGTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 5134 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 5133 GGTTATATTTAG 5122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334894793114378