Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1635 542 4e-149 seq1592 159 4e-34 >seq1635 Length=10282868 Score = 542 bits (600), Expect = 4e-149 Identities = 1256/1877 (67%), Gaps = 22/1877 (1%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 |||||| | || ||||| || | || || ||||| || |||| ||| |||||||| Sbjct 1117708 CTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCC 1117649 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 |||||||| || |||| | ||||||| || || | ||| || | || Sbjct 1117648 GGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGG 1117589 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 ||||||| || | ||| | || ||||||||||| || || || || || || ||||| Sbjct 1117588 CTCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGC 1117529 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| || | | ||| || ||||||||| | ||||||||||| |||| || | Sbjct 1117528 CATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCG-AACCT 1117470 Query 62079 CTTCTGGAAG-GTTTGTAT-TCT-GAATGGATCCACCATCTGCCA-TAATCCTATTCTTG 62134 || |||| |||| || ||| ||||||| || || ||| | | || |||| || Sbjct 1117469 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATTTTTC 1117411 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 |||||||||| |||||| | || |||||| | || | | ||| |||| || ||| Sbjct 1117410 ATCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACT 1117351 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 |||||||| ||||| ||||||| | || |||||||| ||||||| ||||| | || Sbjct 1117350 TGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGAT 1117291 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || ||||| |||| |||||| ||||| ||||| || ||||| || || || || || | Sbjct 1117290 TCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAA 1117231 Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 || |||| |||| || | || | || || || || ||||| ||| || | || Sbjct 1117230 TTCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTT 1117171 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62433 || ||||||||| || || || | | || |||| |||| Sbjct 1117170 GGAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACT-TCCTTCATA 1117112 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 || || ||| ||| | ||||| ||||||||||| || || | || || |||| Sbjct 1117111 GGTTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATA 1117052 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATT 62553 ||| ||||| || || | | |||| | ||||| ||| ||| | ||| || Sbjct 1117051 AATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACG 1116992 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | | ||| || ||||| ||||| ||||||||||| |||||||| || | ||| || Sbjct 1116991 CATTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAA 1116932 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||| || | | |||||||| | || ||||| || || ||||||||||| || ||||| Sbjct 1116931 ATTGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATT 1116872 Query 62674 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---T 62730 | || ||| |||| || || || | ||| |||||| | ||| | Sbjct 1116871 TTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGGTGT 1116812 Query 62731 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62790 ||| |||||||||| ||| | || || | ||| || || || ||||||| || | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 || | | || || || || | |||||| || || ||||| || | |||||||||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 |||||| | ||||| | ||||||| |||| ||| |||| ||||||| || | || || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTC 62969 ||||||||| || ||| | | | || | | | | |||| | | || || || Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTT-CTT 1116573 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 || ||| ||| | ||| || | || |||||||||| | || ||||||| Sbjct 1116572 GCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 1116513 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| || ||||||||||||||||| | | | ||| || |||||||| || |||| Sbjct 1116512 ATTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGAT 1116453 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||||||||| ||||| ||| ||||| | | ||| | ||| || ||||| || || Sbjct 1116452 CAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGTTTC 1116393 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 |||| || || | ||| | | || ||| |||||||| || || || || || || | Sbjct 1116392 TTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGG 1116333 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 | ||||| | ||| ||||||||||| | |||| || |||||| ||||||| | Sbjct 1116332 CACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAAAACTCTTA 1116273 Query 63270 ACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 |||||||| |||| ||||| || ||||| || || || | || | | || | ||| Sbjct 1116272 GCATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATGGATGTGCCTTTAGCA 1116214 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 ||||| | || || || ||||| ||||| || || || | ||| ||| || Sbjct 1116213 CGAATGCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCAGTGCACATTGT 1116154 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAACAG 63445 | | | | | | || || || || ||| || ||| ||| || |||||||| Sbjct 1116153 TCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCAT--TGTCAA-AAGAAAACAT 1116097 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||| ||| | ||| | ||| | ||| ||| | || || || || || ||||| Sbjct 1116096 GAGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAA 1116037 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || |||||| ||||| ||||| || || | || | || ||||| | |||||| Sbjct 1116036 TATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATA 1115977 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || | ||||| ||||| | |||||| || || | ||| | || || ||||| || Sbjct 1115976 CCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTA 1115917 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | | ||||| || | || ||||| ||||||||||| || ||| ||||| || Sbjct 1115916 AGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCA 1115857 Query 63686 TAAATAATAACCGAGTT 63702 ||||||||| | ||||| Sbjct 1115856 TAAATAATAGCGGAGTT 1115840 >seq1592 Length=614636 Score = 159 bits (176), Expect = 4e-34 Identities = 356/532 (67%), Gaps = 3/532 (1%) Strand=Plus/Plus Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 || || |||||||| ||||| ||||| | || | |||||||| || || || ||| Sbjct 387681 GCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCG 387740 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 32783 ||||| || |||||||| || |||||||| || || ||||| ||| |||||| ||| Sbjct 387741 GGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATT 387800 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTGTCATG--TATC 32840 ||||| || |||||||||||||||| | ||| || | || || | || | |||| Sbjct 387801 CCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATATC 387860 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || ||||| || ||||| |||||| ||||| ||||| |||||||| || Sbjct 387861 CAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAAC 387920 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 | |||| || | || | || || ||||| | | || ||||| || Sbjct 387921 AAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCG 387980 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 || || | || || ||||| || || || ||||||||||| | ||||| || ||||| Sbjct 387981 GAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTGC 388040 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 || || || ||| || || | ||||| || || || || ||||| ||| || || Sbjct 388041 ACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAAG 388100 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || |||| ||||| ||||| || |||| || || ||| || | Sbjct 388101 AAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGTC 388160 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 || || |||| |||||| |||||||| ||||| || || || || |||| Sbjct 388161 GCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGCCT 388212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633530317904800