Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1632 122 8e-23 seq1635 104 2e-17 >seq1632 Length=7162766 Score = 122 bits (134), Expect = 8e-23 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| ||||| ||||| || || |||||||| || | || | || || || Sbjct 2591201 CACGTCGAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGC 2591260 Query 51042 GCGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | | | ||||| | || | ||| |||||||| || |||||||| Sbjct 2591261 ACGCTCCTTCCAGCCCATATCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCC 2591320 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 || |||||||| || || | |||||| | ||||| || | || || || ||| || Sbjct 2591321 ATTGGGATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGTACTCCAGCGC 2591380 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | | |||||| || | ||||||||||||||||||||||||| | || Sbjct 2591381 CTGCTCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGCAGAAATCC 2591440 Query 51222 GTGCATCTTGCC--CTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||||||| |||||| | |||||| || || |||||||||| || |||| Sbjct 2591441 GTGCATCTTGCCCTCTCGCACC--AGCTGCAGCTGGGCAGAGTTCCACAGGTCATCGT 2591496 >seq1635 Length=10282868 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || ||||||||||| | || || || |||| || | || || || | Sbjct 1470428 AACCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACC 1470369 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||| || || ||||| |||| |||| || | || ||||||||||| ||||| | Sbjct 1470368 GTCGGATACCATCGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAAGGAATTCCTC 1470313 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || |||||||| | || || || ||||| ||||| ||||||| || || || | Sbjct 1470312 CAGATCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTG 1470253 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || ||||| || || || || | |||||||| || |||| Sbjct 1470252 ATTATAACATTCAGAAGGAGTCAACCTTGCATTTAGTACTTCGGCT 1470207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433260200146970