Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1592 235 6e-57 seq1636 116 4e-21 >seq1592 Length=614636 Score = 235 bits (260), Expect = 6e-57 Identities = 594/891 (67%), Gaps = 19/891 (2%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || || || ||||| || ||||| | || ||| || | ||||| ||| Sbjct 387330 TAGAAATCGGCGTCAAGGGTAAACACGTTGTCCAAGCGA--CTTGTT-ACGACACC-CAT 387385 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || | || || || |||||||| ||||||||||| |||| || ||| Sbjct 387386 GCGCTGGTACTCGGCCACCTTCTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCAT 387445 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTA 92916 | || | ||| |||||||| | ||| || ||| | ||||| | | | Sbjct 387446 CTCCATGAAATTGAAAGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAG 387505 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || | ||| || || || || |||||||| ||||| | | |||| ||||| || | Sbjct 387506 CAGC---CGATCGGCCACGAACTCGATGTACTGGGACATGAGAACACAGTTCATGCCAAT 387562 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | | || || || || || || | ||| || | ||||||| | || || || | | Sbjct 387563 CAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTTCCACAGCATCCCTGAT 387622 Query 93037 GATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 ||| || || | | || | |||| | || || | || | ||||| | |||| Sbjct 387623 GATCTCGATGATGCGCTCCCGCTTGG--GCCGCTGCACTAGATGGTGATACATGA-GCAC 387679 Query 93095 -GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||||||| || | ||||||||| || || |||| ||| ||| ||| || | ||| Sbjct 387680 CGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACC 387739 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || || || ||||| |||||||| || || ||||| || ||| ||| || || Sbjct 387740 GGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGAT 387799 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 ||||||||||| ||||| || | |||||| |||||||| || || || || | || Sbjct 387800 TCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGGCCGATTTCGAGGATAT 387859 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | ||||| || || || ||| | | || | || || ||||| || || Sbjct 387860 CCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATGGTCTCAATAGCATTGAA 387919 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 | ||| || ||||| | || || |||||||| || || || | || ||||| || Sbjct 387920 CAAGTAGTCGCGCTCCTGCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTC 387979 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || ||||||||||| || || ||||| |||||||| || | || || |||||||| Sbjct 387980 GGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGCAACGTGCCTCTGTGATCTG 388039 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||| || ||| ||| | ||| || | ||| || || || || || || || || || || Sbjct 388040 CACCTCCTGACTAAAGCGCTCGACCAAATTCTCGTTAACAATGCCGTCCGAGGCAGCGAA 388099 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 || |||| | ||| ||||| | ||| | || | || |||| || | Sbjct 388100 GAAGGCCAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAGTGAGACGGGCCCAGTCCGT 388159 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || ||||| || ||||| || ||||| || || ||||| || Sbjct 388160 CGCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGGAGGCTTCCGC 388210 >seq1636 Length=11822988 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 6336142 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 6336083 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 6336082 GTGGGTTCGAACCCCACACCTGACAA 6336057 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTG 126325 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||| | | Sbjct 6338839 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 6338780 Query 126326 -GGTTCGAACCCCACACCTGACA 126347 ||||||||||||||| |||||| Sbjct 6338779 TGGTTCGAACCCCACATCTGACA 6338757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556771437763120