Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1635 123 2e-23 seq3819 116 3e-21 seq1619 114 1e-20 seq1604 104 2e-17 >seq1635 Length=10282868 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | |||||||| | || || || || |||||||| ||||| | Sbjct 1470198 CCACCACGAAGCCGAAGTACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGAC 1470257 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| | ||| || |||||| |||| | ||||||||| || |||||| Sbjct 1470258 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 1470317 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| ||||| ||| | | ||| | ||| || | | |||||| Sbjct 1470318 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 1470377 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTA 114388 || | || | || ||||| || || || |||||||| |||||||||| ||| Sbjct 1470378 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCATGGTTTA 1470430 >seq3819 Length=1025 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | || || ||||| | || || || || || |||||||| || Sbjct 428 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 369 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || |||||| || || || |||||| ||||||||||||| ||||| || || Sbjct 368 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 309 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| ||| | | |||| |||||| | | ||| || Sbjct 308 ATTCCCTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACC 249 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||||| || |||||||| || || ||||| ||||| Sbjct 248 TCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACGAAAATTTGCAT 202 >seq1619 Length=1930428 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | ||| || || || | || ||||| || || |||||||||||| | Sbjct 106954 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGAC 106895 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| || || || || || || ||| |||| | |||||| || || || ||| Sbjct 106894 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 106835 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | || | |||||| | || ||||| Sbjct 106834 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 106775 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | || ||||| ||||| || || || || ||||||||| || Sbjct 106774 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 106724 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | ||| || || || | || ||||| || || |||||||||||| | Sbjct 108988 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGAC 108929 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| || || || || || || ||| |||| | |||||| || || || ||| Sbjct 108928 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108869 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | || | |||||| | || ||||| Sbjct 108868 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 108809 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || | ||| | || ||||| ||||| || || || || ||||||||| || Sbjct 108808 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 108758 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || || |||||||||||| || |||||| || || Sbjct 106477 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 106418 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | |||||| || || || |||||||| || ||||| Sbjct 106417 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 106358 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | || ||||| || | ||| | || ||| Sbjct 106357 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 106298 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||||||| || || || ||||||||| Sbjct 106297 CCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || ||||| |||||||||||| || |||||| || || Sbjct 108514 ACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 108455 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | |||||| || || || |||||||| || ||||| Sbjct 108454 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 108395 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | || ||||| || | ||| | || ||| Sbjct 108394 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 108335 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || ||||| || || || || ||||||||| || Sbjct 108334 CCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 108302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || ||||| |||||||||||| || ||||| || || Sbjct 108058 ACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCT 107999 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | |||||| || || || |||||||| || ||||| Sbjct 107998 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 107939 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | || ||||| || | ||| | || ||| Sbjct 107938 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 107879 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || || ||||||||| Sbjct 107878 CCAGTCAGGGTCTTGACGAAGATCTGCATG 107849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || || |||||||||||| | |||||| || || Sbjct 108742 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTACGTCCGTCCTCC 108683 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | |||||| || || || |||||||| || ||||| Sbjct 108682 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 108623 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | || ||||| || | ||| | || ||| Sbjct 108622 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 108563 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||||||| || || || ||||||||| Sbjct 108562 CCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || || |||||||||||| | |||||| || || Sbjct 106708 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAGTACGTCCGTCCTCC 106649 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||| | |||||| || || || |||||||| || ||||| Sbjct 106648 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 106589 Query 114294 ATCTTTTGTTTTA--GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 ||||| || | | | || | |||||| | || ||||| || | ||| | || | Sbjct 106588 ATCTTAGCCTTGAACGATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCT 106529 Query 114352 TGCCGGTC-AGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| ||||| || || || ||||||||| Sbjct 106528 TGCCAGTCAAGAGTCTTGACGAAGATCTGCATG 106496 >seq1604 Length=992631 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | || || || || || |||||||| || Sbjct 939706 ATACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 939647 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || ||||| || || ||| ||||||||||||| ||||| || Sbjct 939646 GAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGG 939587 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| |||||||| | || Sbjct 939586 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCC 939527 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| ||||| ||||| |||||||| Sbjct 939526 ACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 939477 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | || || ||||| | || || || || || |||||||| || Sbjct 940387 CCGCCACGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 940328 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| || || || || || ||| ||||||||||||| ||||| || || Sbjct 940327 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 940268 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | |||| |||||||| | || || Sbjct 940267 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 940208 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||||| ||||||| ||||| ||||| || ||||| Sbjct 940207 TCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 940161 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || ||||| | || || || || || |||||||| || Sbjct 939934 ATACCACCGCGGAGACGAAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 939875 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || || ||| ||||||||||||| ||||| || Sbjct 939874 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGG 939815 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| |||||||| | || Sbjct 939814 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCC 939755 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||||| ||||| |||||||| ||||| Sbjct 939754 ACCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAAATTTGCAT 939705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | || || || || || |||||||| || Sbjct 940162 ATACCACCGCGGAGACGCAGCACCAAATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 940103 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || || ||| | ||||||||||| ||||| || Sbjct 940102 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGG 940043 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| |||||||| | || Sbjct 940042 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCC 939983 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| ||||||| ||||| ||||| || ||||| Sbjct 939982 ACCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACAAAGATTTGCAT 939933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420068664458856