Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1592 291 2e-73 >seq1592 Length=614636 Score = 291 bits (322), Expect = 2e-73 Identities = 512/734 (70%), Gaps = 25/734 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||| ||||| |||||||| || || ||||| ||| | | || | Sbjct 388108 CTGGCCTTCTTCGCTGCCTCGGACGGCATTGTTAACGAGAATTTGGTCGAGCGCTTTAGT 388049 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| | ||||| || |||||||||||||||||||||||||| ||||| Sbjct 388048 CAGGAGGTGCAGATCACAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAAT 387989 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 |||||||| ||| ||||| | |||||| |||| ||||| | ||| || ||| Sbjct 387988 GTGCACTCCGAGATGTACAGCG---TGCTCATTGACACCTACATACGGGAGCCGCAGGAG 387932 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACT 42657 || || ||||||| || || ||||| ||||| ||| | ||| |||||||||| Sbjct 387931 CGCGACTACTTGTTCAATGCTATTGAGACCATGCCGGCTGTA--AAGCGCAAGGCGGACT 387874 Query 42658 GGGCGCTCAACTGGA-----TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||| | ||||| |||| | || | |||| || | |||| | | | || Sbjct 387873 GGGCCATGTCCTGGATATCCTCGAAA---TCGGC-CAAC-TTTGCCGAGCGTATTATTGC 387819 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | ||||| || || |||||||| ||| ||| ||||| ||||| ||||| || Sbjct 387818 CTTTGCGGCCGTGGAAGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAA 387759 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || |||||||| || |||||||| ||||| || ||| | | ||||| | Sbjct 387758 GAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAG 387700 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | || || | |||||||| ||| || | || ||| || ||| |||| | Sbjct 387699 GTCTTCACTGCGACTTTGCGGTGCTCATG-TATC--ACCATCTAGTGCAGCGGCCCAAGC 387643 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||||| || | ||||||| ||| || ||||| |||||| ||||||||||||| Sbjct 387642 GGGAGCGCATCATCGAGATCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTG 387583 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | | |||||||| || | ||||||||| | ||||||| | |||||||| ||| Sbjct 387582 AAGCCCTGCCCGTCAATTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGT 387523 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||| ||||| | || || | || | ||| | | |||||||||| | | Sbjct 387522 TCGTGGCCGATCGGCTGCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATC 387463 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||| | || ||||||| |||||| |||| || ||||| ||||| || |||||| | Sbjct 387462 CTTTCAATTTCATGGAGATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAGAAGG 387403 Query 43132 TCGCCGACTACCAG 43145 | ||||| |||||| Sbjct 387402 TGGCCGAGTACCAG 387389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944187657166880