Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1626 134 1e-26 >seq1626 Length=3432795 Score = 134 bits (148), Expect = 1e-26 Identities = 463/705 (66%), Gaps = 18/705 (3%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-TA 20193 ||||| || || || |||| |||||||| | ||||| || | ||| ||| | || Sbjct 3219977 GGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACATG-GTTAAGATA 3219919 Query 20194 GATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCTAAGACCAGTAACATGAG 20252 | || || || |||| ||||| ||||| || |||| | ||| ||||| ||||| | Sbjct 3219918 CACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAG-CCAGTTACATGGG 3219860 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | ||| || || | |||| ||| ||| ||||| || || || || | ||||||| Sbjct 3219859 CTATCATGTAGGTCAGCAGGGCGTAGGAGGCGATGTTGAATGGCACGCCAAGGCCCATGT 3219800 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC----GTCAGC--TACATAAAATT 20366 | | | |||||||||||| || || ||||| || ||| || || || || | Sbjct 3219799 CGGCGCTGCGCTGATACAGCTGGCACGACAGCTCTCCGCGGGTCTGCGAGACGTAGAACT 3219740 Query 20367 G-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 | | |||| || ||||||||||| ||||| | | |||| ||| ||||| ||| Sbjct 3219739 GTGCCAGACAA-TGGCAGGGCGGAAGTGCCATTTTGGGTATGTCCAGCGGATTCCATGCA 3219681 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 |||| ||||| | | |||| |||||||| | || || | | | |||| Sbjct 3219680 GACATGATGATCCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACTTGGCGCAAT 3219621 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTG 20544 ||||| | |||| ||| | |||||| | || | |||| | || | || |||||||| Sbjct 3219620 TGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTCC-CATATTCGGCACCAAAGTG 3219562 Query 20545 CCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCG 20604 | |||||| || || || || || |||| ||| ||| | | | | |||| | Sbjct 3219561 GCGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCACGGCGCGATCGGTATGGCCCAG 3219502 Query 20605 CCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC-TCCTGTTCTTGAAA 20663 | |||| |||| |||| || ||| ||||| || | || | || | || || Sbjct 3219501 TTTGTCCAGATACTCTCTGGTGCTGTTTCCATCCCAAATGTGCACGTTCTTCGCCTGCAA 3219442 Query 20664 GCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCC 20723 | | | | || || | || || |||||||| |||||| | ||| || | || Sbjct 3219441 G-AGCTTCGCATCTGTCTTTCCGCCCACAAACCAAATCAGCTCCTCCACGACCGCGCGGA 3219383 Query 20724 AAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGA-CTATACCTGGCCTGC 20782 ||||||||| ||| ||||| || |||||||| ||||| | | | || | | ||| Sbjct 3219382 AAAACACCCTCTTGGTGGTCAGCAAGGGAAACGAAAGCCGCATATCGAAACGTAG-CTGA 3219324 Query 20783 ATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCGA 20827 |||| |||| || |||||||| | |||||| |||| |||| Sbjct 3219323 CTGCCGAATACCGACAGGGTGCCGACATTGGTGCGATCGATTCGA 3219279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441301970699920