Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1592 152 6e-32 seq1635 113 5e-20 seq1620 111 2e-19 >seq1592 Length=614636 Score = 152 bits (168), Expect = 6e-32 Identities = 322/478 (67%), Gaps = 2/478 (0%) Strand=Plus/Plus Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832 |||||| |||||||||||||| ||||||| ||| ||||||| |||| || || || Sbjct 387407 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 387466 Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 387467 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 387526 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 125952 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 387527 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 387586 Query 125953 GATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC 126012 || |||| ||| ||| |||||||| || |||| | ||| || ||| ||| | | Sbjct 387587 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 387645 Query 126013 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGT 126071 || | ||| | | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 387646 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 387705 Query 126072 CACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACC 126131 |||||||||| || || || |||||| ||| || ||||||||||| |||||||||| || Sbjct 387706 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 387765 Query 126132 AGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGA 126191 | || |||| ||| || ||||||||||| ||||| ||| || |||| | Sbjct 387766 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 387825 Query 126192 GACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249 |||||| |||||| | ||| || | | | ||| ||| ||||| | |||||| Sbjct 387826 TACGCTCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTT 387883 >seq1635 Length=10282868 Score = 113 bits (124), Expect = 5e-20 Identities = 369/570 (65%), Gaps = 5/570 (1%) Strand=Plus/Minus Query 114275 aaaaTAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 ||||| || | || || | |||||| ||||| | || ||||| ||||| || | ||| Sbjct 1116987 AAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAATTG 1116928 Query 114335 GACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 ||||| || ||| || ||| ||| | || | || |||| | || |||||||| Sbjct 1116927 GACTTCTTGGCT-TCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTTT 1116869 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 114453 || ||| || || | ||| | | |||| | ||||| | | | ||| | Sbjct 1116868 GGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTT---TTTCTGGTGT 1116812 Query 114454 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 114513 || || | || || || || || | ||| || |||| | |||||| | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 114514 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 114573 |||||| | |||||| ||||| ||||| | ||||||||||| | || | |||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 114574 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 114633 |||| | ||||| | |||||| ||||||||||||| | || |||||| ||| || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 114634 CTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 114693 | | |||||| ||| | | | |||| ||| || || || || || || | Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTTCTTG 1116572 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 ||| || || ||||| ||||||| | ||| ||| | ||| || || || Sbjct 1116571 CTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGACA 1116512 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 |||| ||| || | | ||||| || |||||||||| |||||||| || || Sbjct 1116511 TTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATC 1116452 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 || ||||| ||||| | || ||||| || Sbjct 1116451 AGGAATCCATAGAGCGTAAAAAAGATCACG 1116422 >seq1620 Length=1990440 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || || || ||| | || || || || || ||||| | ||| || || | || || ||| Sbjct 857283 TCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 857342 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || ||||| | ||||| | ||||| || || || || ||| | ||||||||| || || Sbjct 857343 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAGACCTCGCC 857401 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 ||| |||||||||||| | ||||| || | | | || ||| |||||||| | ||| Sbjct 857402 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCG 857461 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 857462 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATC 857521 Query 172147 GGCCATGTGCGCGATGGAACGCT 172169 ||| | | |||||| |||| Sbjct 857522 CACCAGGCTGGGGATGGAGCGCT 857544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597257739681040