Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1629 120 2e-22 seq1636 98.7 8e-16 seq1630 91.5 1e-13 >seq1629 Length=4445127 Score = 120 bits (132), Expect = 2e-22 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||| || | |||||| || ||| | || |||||||| ||||| || ||| Sbjct 4296627 CAGAACACTATGTACGACTGGGTGAGGGACCACCGTGTGCACCACAAATACTCGGAGACG 4296686 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || |||||||| ||| | || |||| |||||||||||||| ||||| ||| Sbjct 4296687 GACGCGGATCCGCACAACGCAAACCGCGGATTCTTCTTCTCGCACGTGGGCTGGCTGATG 4296746 Query 108568 ATGACCAAGGACCCCGACGTGATC--TCGGCCGGTCGAAAAATGGACATGACGGACATAT 108625 ||| ||| |||| |||||| || |||| || || | || ||||||| ||| | Sbjct 4296747 ATGCTGAAGCACCCGGACGTGCTCCGTCGG--GGCCGCCAGATCGACATGAGTGACGTGC 4296804 Query 108626 ACTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCT 108685 | ||||||| ||||| | ||| |||||||| || || ||||| || || |||| Sbjct 4296805 TCGCCGATCCCGTGGTGCGCTTCCACCAGAAGTACTTCATCCCCCTTAAGATCTTTCTCT 4296864 Query 108686 GTTT 108689 | || Sbjct 4296865 GCTT 4296868 >seq1636 Length=11822988 Score = 98.7 bits (108), Expect = 8e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| |||||| || | | | ||||||||||||||||||||||||||||||| ||| Sbjct 10488387 AACAAGTTGGTGTCGACCCTCACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 10488446 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| |||||| |||| Sbjct 10488447 CCCTGGGACTACAAGGCAGCCGAGCTGGG 10488475 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||||||||| || ||||| | ||||| ||||||||||||| ||| | | Sbjct 10487811 ACGGCCGGCGTCCACCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 10487870 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| || |||| ||||||| |||| | ||||| | Sbjct 10487871 ATCTTCCTTATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 10487930 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||| | | ||||| ||||| || |||||| || | Sbjct 10487931 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGACGC 10487990 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| |||| ||||||| Sbjct 10487991 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCGGACGTGA 10488045 >seq1630 Length=6141320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 118178 TCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACT 118237 |||||| || || |||| |||| ||||||||| || || || | ||||| |||| Sbjct 1132354 TCCGTCTCGCCCCGCCCGTCCTGCCTCTTGATAGTAGCCTTCAATGGATTTTGGCAGCGA 1132413 Query 118238 GTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGA 118297 || ||| | || || || || ||||| || ||||||||||| || || || || || | Sbjct 1132414 GTAATGCAGGACAAATCGAACATCGGGCTTGTCGATGCCCATGCCAAATGCAATAGTGGC 1132473 Query 118298 ACATATCACTCGGGTCTCGTTCGCCATCCA 118327 ||| ||||||||| ||| ||| | || ||| Sbjct 1132474 ACAAATCACTCGGATCTTGTTGGTCAACCA 1132503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381713066634672