Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1635 111 1e-19 seq3819 95.1 9e-15 seq1619 82.4 5e-11 >seq1635 Length=10282868 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| | ||| || || || || ||||| ||||| || ||| | ||||| Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 1470275 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| ||||||||| | |||||||||||||| || ||||||||||| ||||| Sbjct 1470276 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1470335 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| |||| || ||||| ||| || || | || ||||| || Sbjct 1470336 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 1470395 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| || ||||| Sbjct 1470396 CCCGTTAGGGTCTTTACAAAGATCTGCAT 1470424 >seq3819 Length=1025 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || |||||||| || ||| | | | ||||| Sbjct 410 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCC 351 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | |||||| ||||| || ||||| |||||||| Sbjct 350 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 291 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| || | || || || || | ||| || || | |||||| ||||| Sbjct 290 ATCTTGGCTTTCACGTTCTCAATGGTGTCAGAAGGTTCCACCTCCAGGGTAATAGTTTTT 231 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || || |||||||||||| Sbjct 230 CCAGTCAGAGTCTTCACGAAAATTTGCATA 201 >seq1619 Length=1930428 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || ||||| | ||| || || ||||| |||||||||||| Sbjct 108078 TGCCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCG- 108020 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || |||| |||| || ||||| ||| | ||||||||||| || || Sbjct 108019 -GACAAGGTACGTCCGTCCTCTAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 107961 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| || ||| || ||| | || || || || || Sbjct 107960 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTC 107901 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 107900 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 107850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357336081330830