Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1635 226 3e-54 seq1619 86.0 6e-12 >seq1635 Length=10282868 Score = 226 bits (250), Expect = 3e-54 Identities = 895/1393 (64%), Gaps = 49/1393 (4%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 || || ||| |||| || ||||| ||||| | || |||||| | | ||| | ||| Sbjct 1116338 GCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAGTTTTTAGACCTCAAAAGAAAC 1116397 Query 123363 ATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTG 123422 | || |||||||| | ||| || ||| | || |||||| ||||| | || ||| | Sbjct 1116398 ACTGGAAAAGAAGAAAACAGAGCACGTGATCTTTTTTACGCTCTATGGATTCCTGATCTT 1116457 Query 123423 TTTATGCGACGCGTAAAAG---ACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 || ||| ||| || | | | || || |||||| | |||||||| || ||| Sbjct 1116458 TTCATGAAACGTGTTGAGGCAAATGAAAGC---TGGTCGTTGATGTGTCCACATAAATGT 1116514 Query 123480 CCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGC 123539 || ||| | || |||| ||| | | ||||| ||| | || | |||| |||| Sbjct 1116515 CCTGGCCTTCAAGATGTTTGGGGCGAAAAATTTGAAGAGCTCTATGTCAAATATGAGCAA 1116574 Query 123540 GAAGG-----CAAACAGGTTAGTC-AGGTTCCGGCACG-TGATTTGTTCAAATTTATTAT 123592 ||||| | || | ||| | | | ||| || |||| | ||||| Sbjct 1116575 GAAGGACGTGCGAATCGAACAGTGGAAGCCCAGGCTTTATGGTTTGCT-------ATTAT 1116627 Query 123593 CGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAA 123652 ||| | ||||| || || || | || |||||||| | || || |||| || || || Sbjct 1116628 AGAATCGCAAGTGGAGACTGGTAACCCATACATGCTTTTTAAGGATTCCTGTAATAGAAA 1116687 Query 123653 AACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGA 123712 | |||||| || | || || || ||||| |||||| | || | |||||| |||| Sbjct 1116688 GAGCAATCAACAAAATGTTGGCACCATTAAATGCAGTAATTTATGTACAGAAATTGTCGA 1116747 Query 123713 ATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----T 123767 ||| | | ||| | || || || || ||||| ||||| || |||| | Sbjct 1116748 GTACTCAGCACCTGATGAGGTCGCTGTCTGCAATTTAGCTTCCATAGCACTGAACATGTT 1116807 Query 123768 CGTTGCGTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTA 123827 ||| | | ||| || | | ||||| ||| | ||| |||| |||||||| Sbjct 1116808 CGTAACACCAGAAAAAACG--TATGATTTCAAAAAATTAAAAGAAGTAACCAAAACTGTT 1116865 Query 123828 GTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG 123887 | || ||| | ||||||||||| || | || | ||| || ||| ||||| | Sbjct 1116866 GCCAAAAATCTTAACAAAATTATAGACATCAACTATTACCCCTTGCCAGAAGCCAAGAAG 1116925 Query 123888 TCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTA 123947 || ||||| | || | || |||| | || ||||||| || || ||||| || | Sbjct 1116926 TCCAATTTAAGGCATCGTCCAATCGGTATAGGTGTTCAAGGTTTAGCTGACGCTTTAATT 1116985 Query 123948 ATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG-CAAATAGCCGA 124006 | |||| | || || |||||||| ||||| || |||| | |||||| || Sbjct 1116986 TTAATGCGTTTTCCCTATGAAAGCGAAGAAGCCG-GTCTTTTAAACCAACAAATATTTGA 1117044 Query 124007 AACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAA-AATTCACGGCGCG 124064 ||||||||||| || ||| |||| || || || |||||||| ||| |||| || | Sbjct 1117045 AACAATTTATTTTGGGGCTCTGGAAGCTAGTTGTGAACTTGCTGAAGAATTT--GGAGTA 1117102 Query 124065 TACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAAT 124124 || |||| || | || || || | |||| || ||| | || || || |||||| || Sbjct 1117103 TATGAAACCTATGAAGGAAGTCCTGTGAGCAAGGGAATTCTACAATATGATATGTGGGAT 1117162 Query 124125 GCTACACCGACAAATTTGTGGGACTGG---AGCGTTTTAAAACAACGCATATCGACGCAC 124181 || || || || | ||||| ||| ||| | || || ||| | |||| Sbjct 1117163 AAAACTCCAACGAACCTATGGGATTGGCAAAGCCTG---AAGGAAGACATTAAAAAGCAC 1117219 Query 124182 GGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTA 124241 || | | || ||| |||| || ||| ||||| || ||| | ||||| |||||| | Sbjct 1117220 GGAATTAGGAATTCGTTGTTAGTAGCGCCGATGCCTACAGCATCTACTGCACAAATTATG 1117279 Query 124242 GGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCC 124301 || || |||||||| ||||| || | || | ||| | || | ||||||| ||| | Sbjct 1117280 GGTAATAACGAATCATTCGAACCATATACCACAAATATTTATACGAGACGAGTATTATCT 1117339 Query 124302 GGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTAC 124361 || || ||||||||| | ||||||||||| || || || | || | || | Sbjct 1117340 GGTGAATTTCAAGTGGTCAATCATCATTTATTGAGGGATTTAACAGAATTGGACTTATGG 1117399 Query 124362 GATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCG 124421 ||||| | ||| || |||| ||| | | | ||| | | || || | | Sbjct 1117400 GATGATGAGATGAAAAATAAAATAATTTCCAGCAGGGGCTCCATTCAAGATATTGAAACT 1117459 Query 124422 ATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACG 124477 ||||| || | || | || || ||||| || |||||||| | ||||| || Sbjct 1117460 ATTCCCCAAAAGGTTCGCGATCTTTATAAAACTGTATGGGAAATTTCAGTAAAATCCAC- 1117518 Query 124478 ATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGT 124537 |||| ||||||| | || |||| || | | ||||||||||| || ||||| || Sbjct 1117519 ---AATTAAAATGGCTGCTGATAGAGGTGCATTTATTGATCAAAGTCAGTCATTTAATGT 1117575 Query 124538 GTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAG 124597 ||||| || |||| ||||| |||| |||||| | | | |||| || Sbjct 1117576 TCACGTAGCAGAGCCCAACTACGGAAAATTGACATCCATACATTTTTTCTCCTGGA-AAG 1117634 Query 124598 C-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAAT 124656 | ||||| ||||| || |||||||| ||| | || ||||| || ||| | || || |||| Sbjct 1117635 CTGGACTAAAAACCGGAATGTATTATTTACGCACAAAACCTGCCGCCAACGCAATACAAT 1117694 Query 124657 TTACCGTCGACAA 124669 |||| |||||||| Sbjct 1117695 TTACTGTCGACAA 1117707 >seq1619 Length=1930428 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||||| || || ||||||||||| || |||||| Sbjct 108535 ATGCCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCG 108476 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| || || || ||| | ||||| || ||||| || || Sbjct 108475 GACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 108416 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||| || | ||| Sbjct 108415 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTCTCGATGGTGTCCGAGGGCTC 108357 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || ||||| || || || || || || || ||||| Sbjct 108356 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 108306 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||||| || || ||||||||||| || |||||| Sbjct 108079 ATGCCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCG 108020 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | ||||| || ||||| || || Sbjct 108019 GACAAGGTACGTCCGTCCTCTAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 107960 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || |||| || | |||||| || | |||| Sbjct 107959 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 107900 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || || ||||| Sbjct 107899 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 107850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451930664786480