Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1592 149 8e-31 seq1635 104 3e-17 seq1620 102 1e-16 >seq1592 Length=614636 Score = 149 bits (164), Expect = 8e-31 Identities = 295/434 (68%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 127246 CTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTT 127305 |||||| |||||||||||||| || || || ||| ||||||| |||| || || || Sbjct 387407 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 387466 Query 127306 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 127365 ||| | ||| | || | ||| || | || || || ||||| | ||| |||| Sbjct 387467 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 387526 Query 127366 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 127425 ||||||| ||||| || ||||||| || || | || || || || || Sbjct 387527 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 387586 Query 127426 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCCC 127485 || |||| ||| ||| || |||||||| |||| | ||| || || ||| | | Sbjct 387587 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCC-CGCT 387645 Query 127486 AGGTCTATTGCGTAAAGTCTTGA-AGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCGT 127544 || | ||| | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 387646 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 387705 Query 127545 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 127604 |||||||||| || || || |||||| |||||| ||||||||||| |||||||||| || Sbjct 387706 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 387765 Query 127605 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATA 127664 | || |||| ||| |||| |||||||| || ||||| ||| || |||| | Sbjct 387766 AAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 387825 Query 127665 GACGCTCGGCAAAG 127678 ||||||||||||| Sbjct 387826 TACGCTCGGCAAAG 387839 >seq1635 Length=10282868 Score = 104 bits (114), Expect = 3e-17 Identities = 367/570 (64%), Gaps = 5/570 (1%) Strand=Plus/Minus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||||| || | || || | |||||| ||||| | || ||||| ||||| || | ||| Sbjct 1116987 AAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAATTG 1116928 Query 116296 GACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||||| || ||| || ||| ||| | || | || |||| | || |||||||| Sbjct 1116927 GACTTCTTGGCT-TCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTTT 1116869 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 || ||| || || | ||| | | |||| | ||||| | | | ||| | Sbjct 1116868 GGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTT---TTTCTGGTGT 1116812 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 || || | || || || || || | ||| || |||| | |||||| | | Sbjct 1116811 TACGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGA 1116752 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | |||||| ||||| ||||| | ||||||||||| | || | |||||| Sbjct 1116751 GTACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATT 1116692 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 |||| | ||||| | |||||| | ||||| ||||| | || |||||| ||| || Sbjct 1116691 GCTCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGA 1116632 Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 116654 | | |||||| ||||| | | |||| ||| || || || || || || | Sbjct 1116631 TTCTATAATAGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCCTTCTTG 1116572 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGC 116714 ||| || || ||||| | ||||| | ||| ||| | | ||| || || || Sbjct 1116571 CTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGACA 1116512 Query 116715 CTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 116774 |||| |||||| | | ||||| || ||||||| || |||||||| || || Sbjct 1116511 TTTATGTGGACACATCAACGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATC 1116452 Query 116775 TGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || ||||| || || | || ||||| || Sbjct 1116451 AGGAATCCATAGAGCGTAAAAAAGATCACG 1116422 >seq1620 Length=1990440 Score = 102 bits (112), Expect = 1e-16 Identities = 182/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || || || ||| | || || || || || ||||| | ||||| || | || || ||| Sbjct 857283 TCCTTTCCGCCCGTCAGCCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTTATGTTG 857342 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 176046 || || || | |||| | |||| || || || || ||| | ||||||||| || || Sbjct 857343 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAGACCTCGCC 857401 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||| |||||||||||| | |||||||| | | | || ||| |||||||| | ||| Sbjct 857402 GTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTTACCTCGCG 857461 Query 176107 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 |||| ||| | |||||| | |||||||||| | ||| ||||| ||||| || Sbjct 857462 CTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCCGGCTTCAGGCCATC 857521 Query 176167 GGCCATGTGTGCGATGGAACGCT 176189 ||| | | |||||| |||| Sbjct 857522 CACCAGGCTGGGGATGGAGCGCT 857544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613408747432080