Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1619 100 2e-16 >seq1619 Length=1930428 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| || | ||||| |||||| ||||||||| ||| || || || || ||||||| Sbjct 106956 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGG 106897 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| ||| | || |||| || || ||| | || || |||||||||||||| | || Sbjct 106896 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 106837 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||| || ||||| || || || | || | | ||||| | | || | Sbjct 106836 GAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 106777 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || || || || || | || || ||||||||||||||| Sbjct 106776 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 106727 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| || | ||||| |||||| ||||||||| ||| || || || || ||||||| Sbjct 108990 CGCCGCCACGAAGACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGG 108931 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| ||| | || |||| || || ||| | || || |||||||||||||| | || Sbjct 108930 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGG 108871 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||| || ||||| || || || | || | | ||||| | | || | Sbjct 108870 GAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 108811 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || || || || || | || || ||||||||||||||| Sbjct 108810 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 108761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| || || ||||||||||| ||| || || || || || ||||||| Sbjct 106496 GCCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGA 106437 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| | || |||| || || ||| | || || |||||||||||||| | ||| Sbjct 106436 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 106377 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || || || | || | | ||||| | | || || Sbjct 106376 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGAC 106317 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || || | ||| || ||||||||||||||| Sbjct 106316 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| || || ||||||||||| ||| || ||||| || || ||||||| Sbjct 108533 GCCACCGCGCAGGCGGAGCACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGA 108474 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| | || |||| || || ||| | || || |||||||||||||| | ||| Sbjct 108473 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 108414 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || || || | || | | ||||| | | || || Sbjct 108413 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGAC 108354 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || || | || || ||||||||||||||| Sbjct 108353 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 108305 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| || || ||||||||||| ||| || || || || || ||||||| Sbjct 108761 GCCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGA 108702 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || |||| || || ||| | || || |||||||||||||| | ||| Sbjct 108701 TAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 108642 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || || || | || | | ||||| | | || || Sbjct 108641 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGAC 108582 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || || || || | ||| || ||||||||||||||| Sbjct 108581 CTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||| || || ||||||||||| ||| || || || || || ||||||| Sbjct 106727 GCCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGA 106668 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || |||| || || ||| | || || |||||||||||||| | ||| Sbjct 106667 TAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 106608 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCG--TCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| || || || | || || | | ||||| | | || Sbjct 106607 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGAACGATTCTCGATGGTGTCCGAGGGCTCG 106548 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAA-AGTTTTTACGAAGATCTGCATG 39720 || || | || || || || || || || ||| || ||||||||||||||| Sbjct 106547 ACCTCGAGGGTGATGGTCTTGCCAGTCAAGAGTCTTGACGAAGATCTGCATG 106496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347315249466854