Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1635 122 3e-22 seq3819 98.7 4e-15 >seq1635 Length=10282868 Score = 122 bits (134), Expect = 3e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || |||||||| || ||| | || Sbjct 1470424 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 1470365 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || || || || || |||||||||||||| |||||| Sbjct 1470364 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 1470305 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || ||| | |||||||| |||| || | |||||||| Sbjct 1470304 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 1470245 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | ||||| |||| | || |||||| Sbjct 1470244 ATTCAGAAGGAGTCAACCTTGCATTTAGTA 1470215 Score = 86.0 bits (94), Expect = 2e-11 Identities = 279/428 (65%), Gaps = 9/428 (2%) Strand=Plus/Plus Query 502395 ATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACT 502454 ||||| ||||||||||| | ||| | | || ||| | |||||||| ||||||| ||| Sbjct 1117250 ATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCATATACC 1117309 Query 502455 TCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTA 502514 | ||||| ||||| ||| || ||| | ||||||||| ||| || ||| | |||||| Sbjct 1117310 ACAAATATTTATACGAGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATCATTTA 1117369 Query 502515 ATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTAAT 502574 | | ||||| | ||| | | |||| | |||| || | | | ||| ||||| Sbjct 1117370 TTGAGGGATTTAACAGAATTGGACTTATGGGATGATGAGATGAAAAATAAAATAATTTCC 1117429 Query 502575 GATAATGGTTCTATTCAAAATAT----ATTACTACCTAATATAATTAAAAACATCTATCA 502630 | || || |||||| |||| | || | || || | || | | ||| | Sbjct 1117430 AGCAGGGGCTCCATTCAAGATATTGAAACTATTCCCCAA-AAGGTTCGCGATCTTTATAA 1117488 Query 502631 AACTTCATATGAAATGAAACAAAAATATATAAT--AGATGGATGTTCTATACGGGGAGCT 502688 |||| || ||||| | ||||| | ||| | |||| || | ||| | || || Sbjct 1117489 AACTGTATGGGAAATTTCAGTAAAATCCACAATTAAAATGGCTGCT-GATA-GAGGTGCA 1117546 Query 502689 TATATAGATCAAACCCAATCTATGAATCTTTATTTTGCACAACCAGACTCTCAAAAATTA 502748 | ||| ||||||| || || | ||| || | | ||| | || ||| |||||| Sbjct 1117547 TTTATTGATCAAAGTCAGTCATTTAATGTTCACGTAGCAGAGCCCAACTACGGAAAATTG 1117606 Query 502749 ACTTCCTCTCAATTTTATGCATGGGAACAAGGATTAAAAACAGGGTTATATTATTTACGT 502808 || ||| || |||| | ||| || ||| ||||||| || | ||||||||||| Sbjct 1117607 ACATCCATACATTTTTTCTCCTGGAAAGCTGGACTAAAAACCGGAATGTATTATTTACGC 1117666 Query 502809 AGCAAACC 502816 | ||||| Sbjct 1117667 ACAAAACC 1117674 >seq3819 Length=1025 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||||||| ||||||||||| || || || ||| | ||| Sbjct 202 ATGCAAATTTTCGTGAAGACTCTGACTGGAAAAACTATTACCCTGGAGGTGGAACCTTCT 261 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || || || ||||| ||||| || || || || Sbjct 262 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 321 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | ||| | |||| || || Sbjct 322 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCGGACTACAAC 381 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || || || || Sbjct 382 ATCCAGAAGGAGTCGACTCTCCATTTGGT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975393420254504