Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1630 190 2e-42 seq1553 120 2e-21 >seq1630 Length=6141320 Score = 190 bits (210), Expect = 2e-42 Identities = 566/869 (65%), Gaps = 12/869 (1%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| | || ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 3317860 AATCGGTACCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGACGACGAGAGGG 3317801 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTT-TTGCTGATTG 517965 ||| || || || || || || || | || | || | | |||| |||||| | Sbjct 3317800 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCACGCTTGTTGCTGGT-- 3317743 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 518025 || || | || | || | |||||| || | ||| | || || ||||| || Sbjct 3317742 ---CAGGTCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTT 3317686 Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 || ||||| ||||| || | | |||| || | ||||| | | || | ||| | || Sbjct 3317685 GTCGAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCC 3317626 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || || | |||| || | ||||| ||| || ||||||| ||| |||||||| || Sbjct 3317625 GTCATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATAAGCAC 3317566 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 || || | || || || || ||||| || | |||||| || || || || Sbjct 3317565 GTTGCGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCTGTGGGCTC 3317506 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || || || | || ||||| | || ||||| | || ||||| || || || || | Sbjct 3317505 GTTGATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCATCCTTGGTCGCCTGACG 3317446 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 || || ||||| || || || || ||||| || ||||||| || ||| || || | Sbjct 3317445 CTGCGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACTGTCTTGCCCAG 3317386 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 || || || || | |||||||| | || | ||| || || || | || ||||| Sbjct 3317385 GTACGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGA 3317327 Query 518386 ATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | | | ||| |||| | || | || |||| | || || | | || | | Sbjct 3317326 AGAAGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACGCTGA 3317267 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 || | || ||||||| ||||| || || || ||| || | ||| | | || Sbjct 3317266 CCACATCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGAC 3317207 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 |||| | || || ||||| || || || | |||||| || || || | |||| |||| Sbjct 3317206 CAATCAGACGCTTGGCATCGAAGATCGTTTGGGTTGGGTTCATCGCCACCTGATTCTTGG 3317147 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | ||||| ||||||| | | || || || || || | |||||| ||||| || || |||| Sbjct 3317146 CGGCATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTCGTACGAT 3317087 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 |||| || || || ||||| || || || || |||| || | ||||| |||||| Sbjct 3317086 TACCCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACACAAGAGT 3317027 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713 | ||||| || ||||||||||||| |||| Sbjct 3317026 AGGTTGTGCCCAAATCAATACCAACAGCA 3316998 Score = 102 bits (112), Expect = 6e-16 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || |||||||| ||||| || | || ||| || ||||| | | |||||| | Sbjct 3054899 AAGGGCCAGTACTTCATGTCAGCCTGGACAGCAGAATCCTTAAACTTGCGACCAATCAGA 3054958 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || | ||| || || | | | |||| || | | | | | ||||| ||||| Sbjct 3054959 CGCTTCGAATCGAAGATCCTCTGGTTTGGGTTCACCGTCACCAGGTTCTTGGCGGCATCA 3055018 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||||| | | || || || || | |||||| |||| || || |||||||| || Sbjct 3055019 CCAATCAAGCGCGCCGTGTCCGTGAAGGCAACATAGGATGATGTGGTACGATTACCCTGG 3055078 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || ||||| || || || || ||||| || | ||||| ||||| | |||||| Sbjct 3055079 TCGTTGGCAATGATCTCGACCTTGCCATTCTGGAACACACCCACACAGCAGTGAGTTGTG 3055138 Query 518693 CCTAAATCAATACCAATAGCA 518713 || |||||||||||||||||| Sbjct 3055139 CCCAAATCAATACCAATAGCA 3055159 >seq1553 Length=238302 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 870803 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 870862 || |||| |||||| || ||||| || || | |||||| |||| || ||| | || || Sbjct 47588 GTGGATTTTTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGCCACTTACGCTCTACA 47647 Query 870863 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 870922 |||||||| ||||| |||| | || | ||| | | |||||| || |||||| Sbjct 47648 ATTATTGGCGAATCAGTTTGCCGCTTACTGGAATTTTTGCAACACGACGTAATTCGTATA 47707 Query 870923 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||||| | |||||||||||||| |||||||||||||||||||| Sbjct 47708 AATCATCTTGGTGATTGGGGAACACAATTCGGTATGTTAATTGC 47751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780185336151628