Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1628 105 4e-18 seq3819 104 2e-17 seq1619 104 2e-17 seq1604 104 2e-17 >seq1628 Length=3966273 Score = 105 bits (116), Expect = 4e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 3671159 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 3671218 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 3671219 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 3671278 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 3671279 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 3671336 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 | || |||||||| ||||| ||||| ||||| |||| Sbjct 3671337 TGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTCG 3671372 >seq3819 Length=1025 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || || || || Sbjct 392 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 333 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||| ||| Sbjct 332 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCTTTCACGTTC 273 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | ||| || |||||||| || ||||||||||| Sbjct 272 TCAATGGTGTCAGAAGGTTCCACCTCCAGGGTAATAGTTTTTCCAGTCAGAGTCTTCACG 213 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 212 AAAATTTGCATA 201 >seq1619 Length=1930428 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||| ||| ||||| ||||| || || || | | ||| | || Sbjct 106940 CAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTC 106881 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 106880 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 106821 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | || || ||| || |||| ||| ||| Sbjct 106820 CTGAATCTTAGCCTTGAC--ATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATG 106763 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || |||||||| ||||||||||| Sbjct 106762 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 106728 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||| ||| ||||| ||||| || || || | | ||| | || Sbjct 108974 CAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTC 108915 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 108914 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 108855 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| ||||| || || || | || || ||| || |||| ||| ||| Sbjct 108854 CTGAATCTTAGCCTTGAC--ATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATG 108797 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || |||||||| ||||||||||| Sbjct 108796 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 108762 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | ||| | | |||||||| | || || ||||| ||||| ||||| || Sbjct 108304 CCTCCGCGCAAACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 108245 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | || |||||||| || ||||| || || | || ||||| ||| | || Sbjct 108244 AACGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108185 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || || ||| || Sbjct 108184 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 108125 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || || || |||||||| || ||||||||||| Sbjct 108124 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 108078 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| || || || | | ||| | || ||| Sbjct 106477 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 106418 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 106417 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 106358 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || |||| ||| ||||| || Sbjct 106357 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 106298 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || ||||||||||| Sbjct 106297 CCAGTCAGAGTCTTGACGAAGATCTGCAT 106269 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | ||| | | ||||| || | ||| || ||||| ||||| || || || Sbjct 108760 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 108701 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | || |||||||| || ||||| || || | || ||||| ||| | || Sbjct 108700 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108641 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | || || ||| || Sbjct 108640 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 108581 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || || || |||||||| || ||||||||||| Sbjct 108580 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 108534 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | ||| | | ||||| || | ||| || ||||| ||||| || || || Sbjct 106726 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 106667 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | || |||||||| || ||||| || || | || ||||| ||| | || Sbjct 106666 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 106607 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| |||| ||| || || | || || ||| | Sbjct 106606 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGAACGATTCTCGATGGTGTCCGAGGGCTCGA 106547 Query 34933 CATCGACGGTTATGGTTTTTCCCGT-GAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || |||||||| || ||||||||||| Sbjct 106546 CCTCGAGGGTGATGGTCTTGCCAGTCAAGAGTCTTGACGAAGATCTGCAT 106497 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA-AAGGCTTCGTTCATCATC 34831 ||||| || | ||| || ||||| ||||| || || || || | ||| | || || Sbjct 105551 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGATAAAAGTACGTCCGTCCTC 105492 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || ||||| || || | || ||||| ||| | || | ||||||||||| | Sbjct 105491 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTT 105432 Query 34892 A--ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC-AACATCGACGGTTATGGT 34948 ||||| |||||| | || | || || ||| |||| ||| ||| ||||| Sbjct 105431 GGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGAACAACGAGGGTGATGGT 105372 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| || ||||||||||| Sbjct 105371 CTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 105339 >seq1604 Length=992631 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || ||||| || Sbjct 940351 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 940292 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 940291 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 940232 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || | || |||||| Sbjct 940231 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACA 940172 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 940171 AAGATTTGCATA 940160 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| ||||| || || ||||| || Sbjct 939667 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGTTGCTTGCCGGCGAAG 939608 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || ||| Sbjct 939607 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 939548 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || | || |||||| Sbjct 939547 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACA 939488 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 939487 AAGATCTGCATTTT 939474 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || ||||| || Sbjct 940123 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAA 940064 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 940063 ATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 940004 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || | || |||||| Sbjct 940003 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACA 939944 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 939943 AAGATTTGCATA 939932 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| |||||||| || ||||| || Sbjct 939895 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 939836 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 939835 ATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 939776 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| ||||||||||| || | || |||||| Sbjct 939775 TCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTCAAGGTTTTCACA 939716 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 939715 AAAATTTGCATA 939704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324582806812464