Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1635 434 1e-116 >seq1635 Length=10282868 Score = 434 bits (480), Expect = 1e-116 Identities = 1219/1878 (65%), Gaps = 22/1878 (1%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||| | |||| || || | |||||| |||||||||||||| || Sbjct 1117707 TTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAATACATTCCG 1117648 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || |||| || |||| | ||||| || || ||||| || | || Sbjct 1117647 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTGGGC 1117588 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 |||| | |||| ||||| || ||||| |||||||||||||||||||||||||| ||| Sbjct 1117587 TCTGCTACGTGAACATTAAATGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCC 1117528 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | || || || |||||||| |||||||||| | || || Sbjct 1117527 ATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAAGATCGCGAAC--CT 1117470 Query 47214 TCTGGG----AGATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 | |||| || || | ||| |||||| || || | | | || ||||| ||||| | Sbjct 1117469 TTTGGGGAATAGTTTCAATATCTTGAATGGAGCCCCTGCTGGAAATTATTTTATTTTTCA 1117410 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | | ||| ||||| | || | |||| |||| || | || Sbjct 1117409 TCTCATCATCCCATAAGTCCAATTCTGTTAAATCCCTCAATAAATGATGATTGACCACTT 1117350 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 ||||||| ||||||| ||||| | |||| ||||| | ||||||||||| | |||| Sbjct 1117349 GAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAATGATT 1117290 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTAT 47448 | ||||| || | |||||| ||||| |||||||||||||| | || ||||| || || Sbjct 1117289 CGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAACGAAT 1117230 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATG 47508 | || | ||| | |||| || | || ||||||||| || | | || Sbjct 1117229 TCCTAATTCCGTGCTTTTTAATGTCTTCCTTCAGGCTTTGCCAATCCCATAGGTTCGTTG 1117170 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 || || ||| | ||||||||| |||||||| || || | ||| || | ||| | Sbjct 1117169 GAGTTTTATCCCACATATCATATTGTAGAATTCCCTTGCTCACAGGACTTCCTTCATAGG 1117110 Query 47569 TTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATA 47628 ||| ||| || || || ||| ||||||||||| ||||||| || | | |||| | Sbjct 1117109 TTTCATATACTCCAAATTCTTCAGCAAGTTCACAACTAGCTTCCAGAGCCCCAAAATAAA 1117050 Query 47629 TTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688 ||||||||||||||| | ||||| | | |||||| |||| | ||| | Sbjct 1117049 TTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAAACGCA 1116990 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 || | || || || ||||||||||| ||||| ||||| | ||| || || Sbjct 1116989 TTAAAATTAAAGCGTCAGCTAAACCTTGAACACCTATACCGATTGGACGATGCCTTAAAT 1116930 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808 | || || |||||||| || || || | ||| || ||||||||||| || ||| Sbjct 1116929 TGGACTTCTTGGCTTCTGGCAAGGGGTAATAGTTGATGTCTATAATTTTGTTAAGATTTT 1116870 Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT---TTATAA 47865 | |||| ||||||| || |||||| || | || | | | | Sbjct 1116869 TGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGGTGTTA 1116810 Query 47866 CAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTAT 47925 | ||| | || |||||||| || |||| ||| || ||||| ||||||| || | | Sbjct 1116809 CGAACATGTTCAGTGCTATGGAAGCTAAATTGCAGACAGCGACCTCATCAGGTGCTGAGT 1116750 Query 47926 ATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAT 47985 | | | ||||| | ||||| ||||| ||||| || || || | |||||| ||||| Sbjct 1116749 ACTCGACAATTTCTGTACATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGATTGC 1116690 Query 47986 TNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT 48045 | | ||||| | ||||| ||||||| | || | ||||| || | || |||| Sbjct 1116689 TCTTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTCTCCACTTGCGATT 1116630 Query 48046 CAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTATCAT 48102 | || |||| ||| | || ||| | ||| || | || | || || | Sbjct 1116629 CTATAATAGCAAACCATAAAG-CCTGGGCTT--CCACTGTTCGATTCGCACGTCCTTCTT 1116573 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 | || ||||| ||| | || ||||||| || || | |||| | | ||||||| Sbjct 1116572 GCTCATATTTGACATAGAGCTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGAC 1116513 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTT---TTTACTCTAGTCATAAATA 48219 ||| || ||||||||||| ||||| || |||||| | || | |||| || | Sbjct 1116512 ATTTATGTGGACACATCAACGACCA--GCT-TTCATTTGCCTCAACACGTTTCATGAAAA 1116456 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTAT 48279 ||| || ||||| ||||| ||| | ||| | | ||| |||||| || ||| | | Sbjct 1116455 GATCAGGAATCCATAGAGCGTAAAAAAGATCACGTGCTCTGTTTTCTTCTTTTCCAGTGT 1116396 Query 48280 TCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCA 48339 | ||||| || || | ||| || | | ||| | |||||| || |||||||| || || | Sbjct 1116395 TTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 1116336 Query 48340 TTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 |||| |||| ||| |||||| ||||| | ||||| || ||| ||| |||||| Sbjct 1116335 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAAAACTC 1116276 Query 48400 TTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 ||| |||||| || | ||||| || |||| || ||||| | || | | || ||| Sbjct 1116275 TTAGCATTGGAACTAATCCATTCGACGTACCGTTCGTTCCACATATGGATGTGCCTTTAG 1116216 Query 48460 CTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 | | || | || || || || |||||||| || || || || ||||| Sbjct 1116215 CACGAATGCAATGAACATTAAGTCCAATTCCACCTGCTGACTTGGAAATCAGTGCACATT 1116156 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 ||| || | | | |||| ||||| || ||| |||| | || |||||||| Sbjct 1116155 GTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACATG 1116096 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 |||| ||| || || ||| | | | ||| | ||||| || ||||| |||| Sbjct 1116095 AGGACAATTGAGGTCGATTTGTTGCAGCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAAT 1116036 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 || || || | | || || ||||| | | | ||| ||||| | ||| |||| Sbjct 1116035 ATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCATGAATAC 1115976 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | | || || ||||| | ||| | ||| || | ||| ||||||| |||||| || | Sbjct 1115975 CAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTTATCTTAA 1115916 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| || || | || ||||| ||||||||||| || ||| || |||| Sbjct 1115915 GTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCTCGGTCAT 1115856 Query 48820 TAATAATTGATGAATTTA 48837 |||||| | || |||| Sbjct 1115855 AAATAATAGCGGAGTTTA 1115838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562018595590320