Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20persimilis_20[refseq_20GCF_5F000005195.2_202006-04-18] 12,838 sequences; 188,374,079 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1635 159 3e-34 seq1619 104 2e-17 seq1632 91.5 1e-13 >seq1635 Length=10282868 Score = 159 bits (176), Expect = 3e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | ||| || || || || || || ||||| | | |||| | |||| ||| Sbjct 1470216 ACTAAATGCAAGGTTGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCC 1470275 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || ||||||||||||||||| || ||||| |||||||| || || Sbjct 1470276 AATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGG 1470335 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | || || |||| ||| || |||||||| | || ||| Sbjct 1470336 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 1470395 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || |||| || |||||||| |||||||||||| Sbjct 1470396 CCCGTTAGGGTCTTTACAAAGATCTGCATGGTT 1470428 >seq1619 Length=1930428 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | || ||||| || || || |||||||||| | ||| | | Sbjct 106943 ACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 106884 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 106883 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 106824 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | ||||| || | || || || || |||| Sbjct 106823 GTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGAT 106764 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || ||||| || | || || || || ||||||||| | |||| Sbjct 106763 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCTCCGCG 106719 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || || | || ||||| || || || |||||||||| | ||| | | Sbjct 108977 ACGCAATACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 108918 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 108917 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 108858 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | ||||| || | || || || || |||| Sbjct 108857 GTCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGAT 108798 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || ||||| || | || || || || ||||||||| | |||| Sbjct 108797 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCTCCGCG 108753 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || || || || |||||||||| | ||| | | || ||| Sbjct 106477 ACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 106418 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 106417 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 106358 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || || || || |||| || ||| Sbjct 106357 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 106298 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || || || ||||||||| Sbjct 106297 CCAGTCAGAGTCTTGACGAAGATCTGCATG 106268 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || ||||| || |||||||||| | ||| | | || ||| Sbjct 108514 ACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 108455 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 108454 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 108395 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || || || || |||| || ||| Sbjct 108394 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 108335 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || || | || || || || ||||||||| | |||| Sbjct 108334 CCAGTCAGGGTCTTGACGAAGATCTGCATGCCTCCGCG 108297 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | || ||||| | ||| || || || || || |||||||||| Sbjct 108760 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 108701 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 108700 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108641 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | ||||| || | || || Sbjct 108640 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 108581 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | ||| || || || ||||||||| Sbjct 108580 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108533 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | ||||| | || || || ||||| || || || || || ||||| |||| Sbjct 108304 CCTCCGCGCAAACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 108245 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 108244 AACGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 108185 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | ||||| || | || || Sbjct 108184 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 108125 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | ||| || || || ||||||||| Sbjct 108124 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATG 108077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | || ||||| | ||| || || || || || |||||||||| Sbjct 106726 CCTCCGCGCAAGCGGAGCACCAAATGCAAGGTGGACTCCTTCTGGATGTTGTAATCGGAT 106667 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 106666 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 106607 Query 101363 ATGCCTTCTTTATCTTGAAT-TTTTTGTTTTACAATT-TCTACAGTGTCAGACGTTTCCA 101420 ||||| || || || || || || || || ||| || | ||||| || | || | Sbjct 106606 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGAACGATTCTCGATGGTGTCCGAGGGCTCGA 106547 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAA-AGTTTTTACAAATATCTGCATG 101470 | || || |||| || ||||| || || ||| || || || ||||||||| Sbjct 106546 CCTCGAGGGTGATGGTCTTGCCAGTCAAGAGTCTTGACGAAGATCTGCATG 106496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || ||||| || |||||||||| | || | | || || Sbjct 108058 ACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGTCCGTCCTCT 107999 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || |||||||| || || || || Sbjct 107998 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 107939 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || |||| || ||| Sbjct 107938 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 107879 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || || || ||||||||| Sbjct 107878 CCAGTCAGGGTCTTGACGAAGATCTGCATG 107849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | ||| || || ||||| || ||||| |||| | || | | || ||| Sbjct 106249 ACCAAATGCAAGGTGGACTCCTTTTGGATGTTGTAGTCGGACAACGTACGTCCGTCCTCC 106190 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATC-GGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || || || ||||||||||| ||||| ||| ||||||| || || || || Sbjct 106189 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGTGAATGCCCTCCTTGTCCTG 106130 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || ||| | || | ||||| || | || || || || |||| || || Sbjct 106129 GATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTT 106070 Query 101440 GCCGGTTAAAGTTTTTA-CAAATATCTGCATG 101470 ||| || | ||| || | | || ||||||||| Sbjct 106069 GCCAGTCAGAGTCTTGAGCGAAGATCTGCATG 106038 >seq1632 Length=7162766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 13654 GAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTC 13713 ||| || || || || |||| | | ||||||| || || || || | || | ||||| Sbjct 2591207 GAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCGAATATCGCACGCTC 2591266 Query 13714 CATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGG 13773 | ||||| | |||||| | || | || ||||||||||| || |||| || ||||| Sbjct 2591267 CTTCCAGCCCATATCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCCATTGGG 2591326 Query 13774 ATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTG- 13832 |||||| || || | ||||| |||||||| | || |||| | | ||| ||| Sbjct 2591327 ATCGCGCCCGTCTAGGCTGTACTTGTCGTTCAGCAGGATCGCGT--ACTCCAGCGCCTGC 2591384 Query 13833 -TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 |||| | ||| || | |||||| || ||||| || || | || | |||||||| Sbjct 2591385 TCCGGCGTGGCCGTCCACTCGAGTATTTTCTTGGCCCAGTACATGCGCAGAAATCCGTGC 2591444 Query 13892 ATTTTGCC 13899 || ||||| Sbjct 2591445 ATCTTGCC 2591452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396216397043166